Slot: mean_intra_species_AF
Mean alignment fraction - proportion of genome aligning in ANI calculations. Low AF may indicate accessory genome differences.
URI: https://w3id.org/kbase/kbase_ke_pangenome/mean_intra_species_AF Alias: mean_intra_species_AF
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| GtdbSpeciesClade | GTDB species-level grouping with representative genome | no |
Properties
-
Range: Float
-
Minimum Value: 0
-
Maximum Value: 1
Examples
| Value |
|---|
| 0.88 |
| 0.95 |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/kbase/kbase_ke_pangenome/mean_intra_species_AF |
| native | https://w3id.org/kbase/kbase_ke_pangenome/mean_intra_species_AF |
LinkML Source
name: mean_intra_species_AF
description: Mean alignment fraction - proportion of genome aligning in ANI calculations.
Low AF may indicate accessory genome differences.
examples:
- value: '0.88'
- value: '0.95'
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: mean_intra_species_AF
owner: GtdbSpeciesClade
domain_of:
- GtdbSpeciesClade
range: float
minimum_value: 0.0
maximum_value: 1.0