Slot: phylum
Phylum name with p__ prefix. GTDB uses standardized names that may differ from NCBI (e.g., Pseudomonadota vs Proteobacteria)
URI: https://w3id.org/kbase/kbase_ke_pangenome/phylum
Alias: phylum
Applicable Classes
| Name |
Description |
Modifies Slot |
| GtdbTaxonomyR214v1 |
GTDB release 214 taxonomy with parsed rank assignments |
no |
Properties
Examples
| Value |
| p__Pseudomonadota |
| p__Bacillota |
| p__Actinomycetota |
| p__Halobacteriota |
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
Mappings
| Mapping Type |
Mapped Value |
| self |
https://w3id.org/kbase/kbase_ke_pangenome/phylum |
| native |
https://w3id.org/kbase/kbase_ke_pangenome/phylum |
LinkML Source
name: phylum
description: Phylum name with p__ prefix. GTDB uses standardized names that may differ
from NCBI (e.g., Pseudomonadota vs Proteobacteria)
examples:
- value: p__Pseudomonadota
description: Formerly Proteobacteria
- value: p__Bacillota
description: Formerly Firmicutes
- value: p__Actinomycetota
description: Formerly Actinobacteria
- value: p__Halobacteriota
description: Archaeal phylum
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: phylum
owner: GtdbTaxonomyR214v1
domain_of:
- GtdbTaxonomyR214v1
range: string