Slot: representative_genome_id
Reference genome for this species. Typically highest quality assembly or type strain. Used as anchor for ANI calculations.
URI: https://w3id.org/kbase/kbase_ke_pangenome/representative_genome_id
Alias: representative_genome_id
Applicable Classes
| Name |
Description |
Modifies Slot |
| GtdbSpeciesClade |
GTDB species-level grouping with representative genome |
no |
Properties
Examples
| Value |
| RS_GCF_000742135.1 |
| RS_GCF_001027105.1 |
- Foreign key: Genome.genome_id
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
Mappings
| Mapping Type |
Mapped Value |
| self |
https://w3id.org/kbase/kbase_ke_pangenome/representative_genome_id |
| native |
https://w3id.org/kbase/kbase_ke_pangenome/representative_genome_id |
LinkML Source
name: representative_genome_id
description: Reference genome for this species. Typically highest quality assembly
or type strain. Used as anchor for ANI calculations.
comments:
- 'Foreign key: Genome.genome_id'
examples:
- value: RS_GCF_000742135.1
- value: RS_GCF_001027105.1
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: representative_genome_id
owner: GtdbSpeciesClade
domain_of:
- GtdbSpeciesClade
range: Genome