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Class: Cluster

UniRef100 cluster of identical sequences

URI: https://w3id.org/kbase/kbase_uniref100/Cluster

classDiagram class Cluster click Cluster href "../Cluster/" Cluster : cluster_id Cluster : description Cluster : entity_type Cluster : name Cluster : protocol_id

Slots

Name Cardinality and Range Description Inheritance
cluster_id 1
String		 UniRef100 cluster ID direct
name 0..1
String		 Representative sequence name direct
entity_type 0..1
String		 Entity type (protein) direct
description 0..1
String		 Cluster description direct
protocol_id 0..1
String		 Clustering protocol ID direct

Usages

used by used in type used
ClusterMember cluster_id range Cluster

Identifier and Mapping Information

Annotations

property value
source_table cluster

Schema Source

  • from schema: https://w3id.org/kbase/kbase_uniref100

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_uniref100/Cluster
native https://w3id.org/kbase/kbase_uniref100/Cluster

LinkML Source

Direct

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: UniRef100 cluster of identical sequences
from_schema: https://w3id.org/kbase/kbase_uniref100
attributes:
  cluster_id:
    name: cluster_id
    description: UniRef100 cluster ID
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    identifier: true
    domain_of:
    - Cluster
    - ClusterMember
    required: true
  name:
    name: name
    description: Representative sequence name
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    domain_of:
    - Cluster
  entity_type:
    name: entity_type
    description: Entity type (protein)
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    domain_of:
    - Cluster
    - Entity
  description:
    name: description
    description: Cluster description
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    domain_of:
    - Cluster
  protocol_id:
    name: protocol_id
    description: Clustering protocol ID
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    domain_of:
    - Cluster

Induced

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: UniRef100 cluster of identical sequences
from_schema: https://w3id.org/kbase/kbase_uniref100
attributes:
  cluster_id:
    name: cluster_id
    description: UniRef100 cluster ID
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    identifier: true
    alias: cluster_id
    owner: Cluster
    domain_of:
    - Cluster
    - ClusterMember
    range: string
  name:
    name: name
    description: Representative sequence name
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    alias: name
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  entity_type:
    name: entity_type
    description: Entity type (protein)
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    alias: entity_type
    owner: Cluster
    domain_of:
    - Cluster
    - Entity
    range: string
  description:
    name: description
    description: Cluster description
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    alias: description
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  protocol_id:
    name: protocol_id
    description: Clustering protocol ID
    from_schema: https://w3id.org/kbase/kbase_uniref100
    rank: 1000
    alias: protocol_id
    owner: Cluster
    domain_of:
    - Cluster
    range: string