Class: Cluster

UniRef50 protein sequence cluster. Groups proteins with ≥50% sequence identity and ≥80% coverage to a representative sequence.

URI: https://w3id.org/kbase/kbase_uniref50/Cluster

classDiagram class Cluster click Cluster href "../Cluster/" Cluster : cluster_id Cluster : description Cluster : entity_type Cluster : name Cluster : protocol_id

Slots

Name	Cardinality and Range	Description	Inheritance
cluster_id	1 String	Unique cluster identifier (CDM UUID)	direct
name	0..1 String	Cluster name with representative protein description	direct
entity_type	0..1 String	Type of entity (protein)	direct
description	0..1 String	Additional cluster description (optional)	direct
protocol_id	0..1 String	Clustering protocol identifier	direct

Identifier and Mapping Information

Annotations

property	value
source_table	cluster

Schema Source

from schema: https://w3id.org/kbase/kbase_uniref50

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/kbase_uniref50/Cluster
native	https://w3id.org/kbase/kbase_uniref50/Cluster

LinkML Source

Direct

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: UniRef50 protein sequence cluster. Groups proteins with ≥50% sequence
  identity and ≥80% coverage to a representative sequence.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  cluster_id:
    name: cluster_id
    description: Unique cluster identifier (CDM UUID)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    identifier: true
    domain_of:
    - Cluster
    - ClusterMember
    range: string
    required: true
  name:
    name: name
    description: Cluster name with representative protein description
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Cluster
    range: string
  entity_type:
    name: entity_type
    description: Type of entity (protein)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Cluster
    - Entity
    range: string
  description:
    name: description
    description: Additional cluster description (optional)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Cluster
    range: string
  protocol_id:
    name: protocol_id
    description: Clustering protocol identifier
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Cluster
    range: string

Induced

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: UniRef50 protein sequence cluster. Groups proteins with ≥50% sequence
  identity and ≥80% coverage to a representative sequence.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  cluster_id:
    name: cluster_id
    description: Unique cluster identifier (CDM UUID)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    identifier: true
    alias: cluster_id
    owner: Cluster
    domain_of:
    - Cluster
    - ClusterMember
    range: string
  name:
    name: name
    description: Cluster name with representative protein description
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: name
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  entity_type:
    name: entity_type
    description: Type of entity (protein)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: entity_type
    owner: Cluster
    domain_of:
    - Cluster
    - Entity
    range: string
  description:
    name: description
    description: Additional cluster description (optional)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: description
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  protocol_id:
    name: protocol_id
    description: Clustering protocol identifier
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: protocol_id
    owner: Cluster
    domain_of:
    - Cluster
    range: string