Class: ClusterMember

Member of a UniRef50 cluster. Links individual protein entities to their parent clusters with membership metadata.

URI: https://w3id.org/kbase/kbase_uniref50/ClusterMember

classDiagram class ClusterMember click ClusterMember href "../ClusterMember/" ClusterMember : cluster_id ClusterMember : entity_id ClusterMember : is_representative ClusterMember : is_seed ClusterMember : score

Slots

Name	Cardinality and Range	Description	Inheritance
cluster_id	0..1 String	Parent cluster identifier	direct
entity_id	0..1 String	Member entity identifier	direct
is_representative	0..1 Boolean	Whether this member is the cluster representative	direct
is_seed	0..1 Boolean	Whether this member was used as clustering seed	direct
score	0..1 Float	Membership score/similarity to representative	direct

Identifier and Mapping Information

Annotations

property	value
source_table	clustermember

Schema Source

from schema: https://w3id.org/kbase/kbase_uniref50

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/kbase_uniref50/ClusterMember
native	https://w3id.org/kbase/kbase_uniref50/ClusterMember

LinkML Source

Direct

name: ClusterMember
annotations:
  source_table:
    tag: source_table
    value: clustermember
description: Member of a UniRef50 cluster. Links individual protein entities to their
  parent clusters with membership metadata.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  cluster_id:
    name: cluster_id
    description: Parent cluster identifier
    comments:
    - Foreign key to Cluster.cluster_id
    from_schema: https://w3id.org/kbase/kbase_uniref50
    domain_of:
    - Cluster
    - ClusterMember
    range: string
  entity_id:
    name: entity_id
    description: Member entity identifier
    comments:
    - Foreign key to Entity.entity_id
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
  is_representative:
    name: is_representative
    description: Whether this member is the cluster representative
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - ClusterMember
    range: boolean
  is_seed:
    name: is_seed
    description: Whether this member was used as clustering seed
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - ClusterMember
    range: boolean
  score:
    name: score
    description: Membership score/similarity to representative
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - ClusterMember
    range: float

Induced

name: ClusterMember
annotations:
  source_table:
    tag: source_table
    value: clustermember
description: Member of a UniRef50 cluster. Links individual protein entities to their
  parent clusters with membership metadata.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  cluster_id:
    name: cluster_id
    description: Parent cluster identifier
    comments:
    - Foreign key to Cluster.cluster_id
    from_schema: https://w3id.org/kbase/kbase_uniref50
    alias: cluster_id
    owner: ClusterMember
    domain_of:
    - Cluster
    - ClusterMember
    range: string
  entity_id:
    name: entity_id
    description: Member entity identifier
    comments:
    - Foreign key to Entity.entity_id
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: entity_id
    owner: ClusterMember
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
  is_representative:
    name: is_representative
    description: Whether this member is the cluster representative
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: is_representative
    owner: ClusterMember
    domain_of:
    - ClusterMember
    range: boolean
  is_seed:
    name: is_seed
    description: Whether this member was used as clustering seed
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: is_seed
    owner: ClusterMember
    domain_of:
    - ClusterMember
    range: boolean
  score:
    name: score
    description: Membership score/similarity to representative
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: score
    owner: ClusterMember
    domain_of:
    - ClusterMember
    range: float