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Class: Entity

Protein entity in the UniRef50 database. Represents individual protein sequences that are members of clusters.

URI: https://w3id.org/kbase/kbase_uniref50/Entity

classDiagram class Entity click Entity href "../Entity/" Entity : created Entity : data_source Entity : data_source_entity_id Entity : entity_id Entity : entity_type Entity : updated

Slots

Name Cardinality and Range Description Inheritance
entity_id 1
String		 Unique entity identifier (CDM UUID) direct
data_source_entity_id 0..1
String		 Original UniRef50 identifier direct
entity_type 0..1
String		 Type of entity direct
data_source 0..1
String		 Source database direct
updated 0..1
Datetime		 Last update timestamp direct
created 0..1
Datetime		 Creation timestamp direct

Identifier and Mapping Information

Annotations

property value
source_table entity

Schema Source

  • from schema: https://w3id.org/kbase/kbase_uniref50

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_uniref50/Entity
native https://w3id.org/kbase/kbase_uniref50/Entity

LinkML Source

Direct

name: Entity
annotations:
  source_table:
    tag: source_table
    value: entity
description: Protein entity in the UniRef50 database. Represents individual protein
  sequences that are members of clusters.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  entity_id:
    name: entity_id
    description: Unique entity identifier (CDM UUID)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    identifier: true
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
    required: true
  data_source_entity_id:
    name: data_source_entity_id
    description: Original UniRef50 identifier
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Entity
    range: string
    pattern: UniRef50_[A-Z0-9]+
  entity_type:
    name: entity_type
    description: Type of entity
    from_schema: https://w3id.org/kbase/kbase_uniref50
    domain_of:
    - Cluster
    - Entity
    range: string
  data_source:
    name: data_source
    description: Source database
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Entity
    range: string
  updated:
    name: updated
    description: Last update timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Entity
    range: datetime
  created:
    name: created
    description: Creation timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    domain_of:
    - Entity
    range: datetime

Induced

name: Entity
annotations:
  source_table:
    tag: source_table
    value: entity
description: Protein entity in the UniRef50 database. Represents individual protein
  sequences that are members of clusters.
from_schema: https://w3id.org/kbase/kbase_uniref50
attributes:
  entity_id:
    name: entity_id
    description: Unique entity identifier (CDM UUID)
    from_schema: https://w3id.org/kbase/kbase_uniref50
    identifier: true
    alias: entity_id
    owner: Entity
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
    required: true
  data_source_entity_id:
    name: data_source_entity_id
    description: Original UniRef50 identifier
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: data_source_entity_id
    owner: Entity
    domain_of:
    - Entity
    range: string
    pattern: UniRef50_[A-Z0-9]+
  entity_type:
    name: entity_type
    description: Type of entity
    from_schema: https://w3id.org/kbase/kbase_uniref50
    alias: entity_type
    owner: Entity
    domain_of:
    - Cluster
    - Entity
    range: string
  data_source:
    name: data_source
    description: Source database
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: data_source
    owner: Entity
    domain_of:
    - Entity
    range: string
  updated:
    name: updated
    description: Last update timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: updated
    owner: Entity
    domain_of:
    - Entity
    range: datetime
  created:
    name: created
    description: Creation timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref50
    rank: 1000
    alias: created
    owner: Entity
    domain_of:
    - Entity
    range: datetime