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Class: Cluster

UniRef90 protein sequence cluster. Groups proteins with ≥90% sequence identity and ≥80% coverage to a representative sequence.

EXAMPLE CLUSTERS: - "Cluster: LysM peptidoglycan-binding domain-containing protein" - "Cluster: mucin-6" - "Cluster: SDR family NAD(P)-dependent oxidoreductase"

URI: https://w3id.org/kbase/kbase_uniref90/Cluster

classDiagram class Cluster click Cluster href "../Cluster/" Cluster : cluster_id Cluster : description Cluster : entity_type Cluster : name Cluster : protocol_id

Slots

Name Cardinality and Range Description Inheritance
cluster_id 1
String		 Unique cluster identifier (CDM UUID) direct
name 0..1
String		 Cluster name with representative protein description direct
entity_type 0..1
String		 Type of entity (protein) direct
description 0..1
String		 Additional cluster description (optional) direct
protocol_id 0..1
String		 Clustering protocol identifier direct

Identifier and Mapping Information

Annotations

property value
source_table cluster

Schema Source

  • from schema: https://w3id.org/kbase/kbase_uniref90

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_uniref90/Cluster
native https://w3id.org/kbase/kbase_uniref90/Cluster

LinkML Source

Direct

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: 'UniRef90 protein sequence cluster. Groups proteins with ≥90% sequence
  identity and ≥80% coverage to a representative sequence.

  EXAMPLE CLUSTERS: - "Cluster: LysM peptidoglycan-binding domain-containing protein"
  - "Cluster: mucin-6" - "Cluster: SDR family NAD(P)-dependent oxidoreductase"'
from_schema: https://w3id.org/kbase/kbase_uniref90
attributes:
  cluster_id:
    name: cluster_id
    description: Unique cluster identifier (CDM UUID)
    examples:
    - value: CDM:c811d1d9-3235-4b7a-9012-9387f87a1188
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    identifier: true
    domain_of:
    - Cluster
    - ClusterMember
    range: string
    required: true
  name:
    name: name
    description: Cluster name with representative protein description
    examples:
    - value: 'Cluster: LysM peptidoglycan-binding domain-containing protein'
    - value: 'Cluster: mucin-6'
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Cluster
    range: string
  entity_type:
    name: entity_type
    description: Type of entity (protein)
    examples:
    - value: protein
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Cluster
    - Entity
    range: string
  description:
    name: description
    description: Additional cluster description (optional)
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Cluster
    range: string
  protocol_id:
    name: protocol_id
    description: Clustering protocol identifier
    examples:
    - value: UniRef 100
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Cluster
    range: string

Induced

name: Cluster
annotations:
  source_table:
    tag: source_table
    value: cluster
description: 'UniRef90 protein sequence cluster. Groups proteins with ≥90% sequence
  identity and ≥80% coverage to a representative sequence.

  EXAMPLE CLUSTERS: - "Cluster: LysM peptidoglycan-binding domain-containing protein"
  - "Cluster: mucin-6" - "Cluster: SDR family NAD(P)-dependent oxidoreductase"'
from_schema: https://w3id.org/kbase/kbase_uniref90
attributes:
  cluster_id:
    name: cluster_id
    description: Unique cluster identifier (CDM UUID)
    examples:
    - value: CDM:c811d1d9-3235-4b7a-9012-9387f87a1188
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    identifier: true
    alias: cluster_id
    owner: Cluster
    domain_of:
    - Cluster
    - ClusterMember
    range: string
  name:
    name: name
    description: Cluster name with representative protein description
    examples:
    - value: 'Cluster: LysM peptidoglycan-binding domain-containing protein'
    - value: 'Cluster: mucin-6'
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: name
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  entity_type:
    name: entity_type
    description: Type of entity (protein)
    examples:
    - value: protein
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: entity_type
    owner: Cluster
    domain_of:
    - Cluster
    - Entity
    range: string
  description:
    name: description
    description: Additional cluster description (optional)
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: description
    owner: Cluster
    domain_of:
    - Cluster
    range: string
  protocol_id:
    name: protocol_id
    description: Clustering protocol identifier
    examples:
    - value: UniRef 100
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: protocol_id
    owner: Cluster
    domain_of:
    - Cluster
    range: string