Class: Entity

Protein entity in the UniRef90 database. Represents individual protein sequences that are members of clusters.

EXAMPLE ENTITIES: - UniRef90_A0A8C8D229: A cluster entity - UniRef90_A0A060WBS1: Another cluster entity

URI: https://w3id.org/kbase/kbase_uniref90/Entity

classDiagram class Entity click Entity href "../Entity/" Entity : created Entity : data_source Entity : data_source_entity_id Entity : entity_id Entity : entity_type Entity : updated

Slots

Name	Cardinality and Range	Description	Inheritance
entity_id	1 String	Unique entity identifier (CDM UUID)	direct
data_source_entity_id	0..1 String	Original UniRef90 identifier	direct
entity_type	0..1 String	Type of entity	direct
data_source	0..1 String	Source database	direct
updated	0..1 Datetime	Last update timestamp	direct
created	0..1 Datetime	Creation timestamp	direct

Identifier and Mapping Information

Annotations

property	value
source_table	entity

Schema Source

from schema: https://w3id.org/kbase/kbase_uniref90

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/kbase_uniref90/Entity
native	https://w3id.org/kbase/kbase_uniref90/Entity

LinkML Source

Direct

name: Entity
annotations:
  source_table:
    tag: source_table
    value: entity
description: 'Protein entity in the UniRef90 database. Represents individual protein
  sequences that are members of clusters.

  EXAMPLE ENTITIES: - UniRef90_A0A8C8D229: A cluster entity - UniRef90_A0A060WBS1:
  Another cluster entity'
from_schema: https://w3id.org/kbase/kbase_uniref90
attributes:
  entity_id:
    name: entity_id
    description: Unique entity identifier (CDM UUID)
    examples:
    - value: CDM:7164e39a-9980-46e6-a422-fe28ecc96442
    from_schema: https://w3id.org/kbase/kbase_uniref90
    identifier: true
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
    required: true
  data_source_entity_id:
    name: data_source_entity_id
    description: Original UniRef90 identifier
    examples:
    - value: UniRef90_A0A8C8D229
    - value: UniRef90_A0A060WBS1
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Entity
    range: string
    pattern: UniRef90_[A-Z0-9]+
  entity_type:
    name: entity_type
    description: Type of entity
    examples:
    - value: Cluster
    from_schema: https://w3id.org/kbase/kbase_uniref90
    domain_of:
    - Cluster
    - Entity
    range: string
  data_source:
    name: data_source
    description: Source database
    examples:
    - value: UniRef 100
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Entity
    range: string
  updated:
    name: updated
    description: Last update timestamp
    examples:
    - value: '2025-11-24T15:59:26'
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Entity
    range: datetime
  created:
    name: created
    description: Creation timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    domain_of:
    - Entity
    range: datetime

Induced

name: Entity
annotations:
  source_table:
    tag: source_table
    value: entity
description: 'Protein entity in the UniRef90 database. Represents individual protein
  sequences that are members of clusters.

  EXAMPLE ENTITIES: - UniRef90_A0A8C8D229: A cluster entity - UniRef90_A0A060WBS1:
  Another cluster entity'
from_schema: https://w3id.org/kbase/kbase_uniref90
attributes:
  entity_id:
    name: entity_id
    description: Unique entity identifier (CDM UUID)
    examples:
    - value: CDM:7164e39a-9980-46e6-a422-fe28ecc96442
    from_schema: https://w3id.org/kbase/kbase_uniref90
    identifier: true
    alias: entity_id
    owner: Entity
    domain_of:
    - ClusterMember
    - CrossReference
    - Entity
    range: string
    required: true
  data_source_entity_id:
    name: data_source_entity_id
    description: Original UniRef90 identifier
    examples:
    - value: UniRef90_A0A8C8D229
    - value: UniRef90_A0A060WBS1
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: data_source_entity_id
    owner: Entity
    domain_of:
    - Entity
    range: string
    pattern: UniRef90_[A-Z0-9]+
  entity_type:
    name: entity_type
    description: Type of entity
    examples:
    - value: Cluster
    from_schema: https://w3id.org/kbase/kbase_uniref90
    alias: entity_type
    owner: Entity
    domain_of:
    - Cluster
    - Entity
    range: string
  data_source:
    name: data_source
    description: Source database
    examples:
    - value: UniRef 100
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: data_source
    owner: Entity
    domain_of:
    - Entity
    range: string
  updated:
    name: updated
    description: Last update timestamp
    examples:
    - value: '2025-11-24T15:59:26'
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: updated
    owner: Entity
    domain_of:
    - Entity
    range: datetime
  created:
    name: created
    description: Creation timestamp
    from_schema: https://w3id.org/kbase/kbase_uniref90
    rank: 1000
    alias: created
    owner: Entity
    domain_of:
    - Entity
    range: datetime