Class: CentrifugeGold
Centrifuge taxonomic classifications for GOLD samples. Fast metagenomic classifier based on FM-index compression.
TOOL: Centrifuge (Kim et al. 2016) - Very fast classification - Low memory usage via FM-index - Works with large databases
URI: https://w3id.org/kbase/nmdc_core/CentrifugeGold
classDiagram
class CentrifugeGold
click CentrifugeGold href "../CentrifugeGold/"
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| source_table | centrifuge_gold |
Schema Source
- from schema: https://w3id.org/kbase/nmdc_core
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/kbase/nmdc_core/CentrifugeGold |
| native | https://w3id.org/kbase/nmdc_core/CentrifugeGold |
LinkML Source
Direct
name: CentrifugeGold
annotations:
source_table:
tag: source_table
value: centrifuge_gold
description: 'Centrifuge taxonomic classifications for GOLD samples. Fast metagenomic
classifier based on FM-index compression.
TOOL: Centrifuge (Kim et al. 2016) - Very fast classification - Low memory usage
via FM-index - Works with large databases'
from_schema: https://w3id.org/kbase/nmdc_core
Induced
name: CentrifugeGold
annotations:
source_table:
tag: source_table
value: centrifuge_gold
description: 'Centrifuge taxonomic classifications for GOLD samples. Fast metagenomic
classifier based on FM-index compression.
TOOL: Centrifuge (Kim et al. 2016) - Very fast classification - Low memory usage
via FM-index - Works with large databases'
from_schema: https://w3id.org/kbase/nmdc_core