Skip to content

Enum: CogFunctionalCategory

COG single-letter functional categories (A-Z). Provides broad functional classification of proteins based on Clusters of Orthologous Groups. 26 categories covering information processing, metabolism, and cellular processes.

CATEGORY GROUPS: - INFORMATION STORAGE/PROCESSING: J, A, K, L, B - CELLULAR PROCESSES/SIGNALING: D, Y, V, T, M, N, Z, W, U, O, X - METABOLISM: C, G, E, F, H, I, P, Q - POORLY CHARACTERIZED: R, S

URI: https://w3id.org/kbase/nmdc_core/CogFunctionalCategory

Permissible Values

Value Meaning Description
A None RNA processing and modification (color
B None Chromatin structure and dynamics (color
C None Energy production and conversion (color
D None Cell cycle control, cell division, chromosome partitioning (color
E None Amino acid transport and metabolism (color
F None Nucleotide transport and metabolism (color
G None Carbohydrate transport and metabolism (color
H None Coenzyme transport and metabolism (color
I None Lipid transport and metabolism (color
J None Translation, ribosomal structure and biogenesis (color
K None Transcription (color
L None Replication, recombination and repair (color
M None Cell wall/membrane/envelope biogenesis (color
N None Cell motility (color
O None Posttranslational modification, protein turnover, chaperones (color
P None Inorganic ion transport and metabolism (color
Q None Secondary metabolites biosynthesis, transport and catabolism (color
R None General function prediction only (color
S None Function unknown (color
T None Signal transduction mechanisms (color
U None Intracellular trafficking, secretion, and vesicular transport (color
V None Defense mechanisms (color
W None Extracellular structures (color
X None Mobilome - prophages, transposons (color
Y None Nuclear structure (color
Z None Cytoskeleton (color

Slots

Name Description
category_code Single-letter COG category code (A-Z)

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/kbase/nmdc_core

LinkML Source

name: CogFunctionalCategory
description: 'COG single-letter functional categories (A-Z). Provides broad functional
  classification of proteins based on Clusters of Orthologous Groups. 26 categories
  covering information processing, metabolism, and cellular processes.

  CATEGORY GROUPS: - INFORMATION STORAGE/PROCESSING: J, A, K, L, B - CELLULAR PROCESSES/SIGNALING:
  D, Y, V, T, M, N, Z, W, U, O, X - METABOLISM: C, G, E, F, H, I, P, Q - POORLY CHARACTERIZED:
  R, S'
from_schema: https://w3id.org/kbase/nmdc_core
rank: 1000
permissible_values:
  A:
    text: A
    description: RNA processing and modification (color
  B:
    text: B
    description: Chromatin structure and dynamics (color
  C:
    text: C
    description: Energy production and conversion (color
  D:
    text: D
    description: Cell cycle control, cell division, chromosome partitioning (color
  E:
    text: E
    description: Amino acid transport and metabolism (color
  F:
    text: F
    description: Nucleotide transport and metabolism (color
  G:
    text: G
    description: Carbohydrate transport and metabolism (color
  H:
    text: H
    description: Coenzyme transport and metabolism (color
  I:
    text: I
    description: Lipid transport and metabolism (color
  J:
    text: J
    description: Translation, ribosomal structure and biogenesis (color
  K:
    text: K
    description: Transcription (color
  L:
    text: L
    description: Replication, recombination and repair (color
  M:
    text: M
    description: Cell wall/membrane/envelope biogenesis (color
  N:
    text: N
    description: Cell motility (color
  O:
    text: O
    description: Posttranslational modification, protein turnover, chaperones (color
  P:
    text: P
    description: Inorganic ion transport and metabolism (color
  Q:
    text: Q
    description: Secondary metabolites biosynthesis, transport and catabolism (color
  R:
    text: R
    description: General function prediction only (color
  S:
    text: S
    description: Function unknown (color
  T:
    text: T
    description: Signal transduction mechanisms (color
  U:
    text: U
    description: Intracellular trafficking, secretion, and vesicular transport (color
  V:
    text: V
    description: Defense mechanisms (color
  W:
    text: W
    description: Extracellular structures (color
  X:
    text: X
    description: Mobilome - prophages, transposons (color
  Y:
    text: Y
    description: Nuclear structure (color
  Z:
    text: Z
    description: Cytoskeleton (color