Class: EcTerms

Enzyme Commission (EC) number terms. EC provides hierarchical classification of enzymes based on reactions catalyzed.

TOTAL TERMS: 8,813

EC NUMBER HIERARCHY: - Level 1: X.-.-.- (7 classes: oxidoreductases, transferases, etc.) - Level 2: X.X.-.- (subclasses by bond type/group transferred) - Level 3: X.X.X.- (sub-subclasses by specific reaction) - Level 4: X.X.X.X (specific enzyme)

EXAMPLE: 1.1.1.1 (Alcohol dehydrogenase) - 1.-.-.- Oxidoreductases (act on CH-OH group donors) - 1.1.-.- Acting on CH-OH group of donors - 1.1.1.- With NAD(+) or NADP(+) as acceptor - 1.1.1.1 Alcohol dehydrogenase

URI: https://w3id.org/kbase/nmdc_core/EcTerms

classDiagram class EcTerms click EcTerms href "../EcTerms/" EcTerms : description EcTerms : ec_id EcTerms : is_obsolete EcTerms : name EcTerms : synonyms

Slots

Name	Cardinality and Range	Description	Inheritance
ec_id	1 String	EC number in X	direct
name	0..1 String	Enzyme name or class description	direct
description	0..1 String	Detailed enzyme description (may repeat name for specific enzymes)	direct
synonyms	0..1 String	Alternative enzyme names	direct
is_obsolete	0..1 Boolean	Whether this EC number is deprecated/transferred	direct

Identifier and Mapping Information

Annotations

property	value
source_table	ec_terms

Schema Source

from schema: https://w3id.org/kbase/nmdc_core

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/nmdc_core/EcTerms
native	https://w3id.org/kbase/nmdc_core/EcTerms

LinkML Source

Direct

name: EcTerms
annotations:
  source_table:
    tag: source_table
    value: ec_terms
description: 'Enzyme Commission (EC) number terms. EC provides hierarchical classification
  of enzymes based on reactions catalyzed.

  TOTAL TERMS: 8,813

  EC NUMBER HIERARCHY: - Level 1: X.-.-.- (7 classes: oxidoreductases, transferases,
  etc.) - Level 2: X.X.-.- (subclasses by bond type/group transferred) - Level 3:
  X.X.X.- (sub-subclasses by specific reaction) - Level 4: X.X.X.X (specific enzyme)

  EXAMPLE: 1.1.1.1 (Alcohol dehydrogenase) - 1.-.-.- Oxidoreductases (act on CH-OH
  group donors) - 1.1.-.- Acting on CH-OH group of donors - 1.1.1.- With NAD(+) or
  NADP(+) as acceptor - 1.1.1.1 Alcohol dehydrogenase'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  ec_id:
    name: ec_id
    description: EC number in X.X.X.X format. Dashes (-) indicate partial classification
      at higher hierarchy levels.
    examples:
    - value: 1.-.-.-
      description: Class 1 - Oxidoreductases (top level)
    - value: 1.1.-.-
      description: Subclass - Acting on CH-OH group
    - value: 1.1.1.-
      description: Sub-subclass - NAD/NADP acceptor
    - value: 1.1.1.1
      description: Alcohol dehydrogenase (full EC number)
    - value: 1.1.1.10
      description: L-xylulose reductase
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    domain_of:
    - EcTerms
    range: string
    required: true
    pattern: \d+\.[-\d]+\.[-\d]+\.[-\d]+
  name:
    name: name
    description: Enzyme name or class description
    examples:
    - value: Oxidoreductases.
      description: Class 1 name
    - value: Acting on the CH-OH group of donors.
      description: Subclass description
    - value: With NAD(+) or NADP(+) as acceptor.
      description: Sub-subclass description
    - value: Alcohol dehydrogenase
      description: Specific enzyme name
    - value: L-xylulose reductase
      description: Another specific enzyme
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  description:
    name: description
    description: Detailed enzyme description (may repeat name for specific enzymes)
    examples:
    - value: alcohol dehydrogenase
      description: Description for EC 1.1.1.1
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - AnnotationTermsUnified
    - EcTerms
    - CogCategories
    - StudyTable
    - MetacycPathways
    range: string
  synonyms:
    name: synonyms
    description: Alternative enzyme names
    examples:
    - value: aldehyde reductase
      description: Synonym for alcohol dehydrogenase
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - GoTerms
    - EcTerms
    - TraitUnified
    range: string
  is_obsolete:
    name: is_obsolete
    description: Whether this EC number is deprecated/transferred
    examples:
    - value: 'False'
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - GoHierarchyFlat
    - EcTerms
    range: boolean

Induced

name: EcTerms
annotations:
  source_table:
    tag: source_table
    value: ec_terms
description: 'Enzyme Commission (EC) number terms. EC provides hierarchical classification
  of enzymes based on reactions catalyzed.

  TOTAL TERMS: 8,813

  EC NUMBER HIERARCHY: - Level 1: X.-.-.- (7 classes: oxidoreductases, transferases,
  etc.) - Level 2: X.X.-.- (subclasses by bond type/group transferred) - Level 3:
  X.X.X.- (sub-subclasses by specific reaction) - Level 4: X.X.X.X (specific enzyme)

  EXAMPLE: 1.1.1.1 (Alcohol dehydrogenase) - 1.-.-.- Oxidoreductases (act on CH-OH
  group donors) - 1.1.-.- Acting on CH-OH group of donors - 1.1.1.- With NAD(+) or
  NADP(+) as acceptor - 1.1.1.1 Alcohol dehydrogenase'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  ec_id:
    name: ec_id
    description: EC number in X.X.X.X format. Dashes (-) indicate partial classification
      at higher hierarchy levels.
    examples:
    - value: 1.-.-.-
      description: Class 1 - Oxidoreductases (top level)
    - value: 1.1.-.-
      description: Subclass - Acting on CH-OH group
    - value: 1.1.1.-
      description: Sub-subclass - NAD/NADP acceptor
    - value: 1.1.1.1
      description: Alcohol dehydrogenase (full EC number)
    - value: 1.1.1.10
      description: L-xylulose reductase
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    alias: ec_id
    owner: EcTerms
    domain_of:
    - EcTerms
    range: string
    required: true
    pattern: \d+\.[-\d]+\.[-\d]+\.[-\d]+
  name:
    name: name
    description: Enzyme name or class description
    examples:
    - value: Oxidoreductases.
      description: Class 1 name
    - value: Acting on the CH-OH group of donors.
      description: Subclass description
    - value: With NAD(+) or NADP(+) as acceptor.
      description: Sub-subclass description
    - value: Alcohol dehydrogenase
      description: Specific enzyme name
    - value: L-xylulose reductase
      description: Another specific enzyme
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: name
    owner: EcTerms
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  description:
    name: description
    description: Detailed enzyme description (may repeat name for specific enzymes)
    examples:
    - value: alcohol dehydrogenase
      description: Description for EC 1.1.1.1
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: description
    owner: EcTerms
    domain_of:
    - AnnotationTermsUnified
    - EcTerms
    - CogCategories
    - StudyTable
    - MetacycPathways
    range: string
  synonyms:
    name: synonyms
    description: Alternative enzyme names
    examples:
    - value: aldehyde reductase
      description: Synonym for alcohol dehydrogenase
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: synonyms
    owner: EcTerms
    domain_of:
    - GoTerms
    - EcTerms
    - TraitUnified
    range: string
  is_obsolete:
    name: is_obsolete
    description: Whether this EC number is deprecated/transferred
    examples:
    - value: 'False'
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: is_obsolete
    owner: EcTerms
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - GoHierarchyFlat
    - EcTerms
    range: boolean