Class: KeggKoTerms

KEGG Orthology (KO) terms. KO provides functional orthologs across species for pathway and module membership.

TOTAL TERMS: 8,104

KO IDENTIFIER FORMAT: KXXXXX (K followed by 5 digits)

USAGE: Link genes to pathways via KO assignments. Each KO represents a functional ortholog group - genes with the same KO likely have similar function across species.

NOTE: Names and definitions may be sparse in this table. For full KO information, query KEGG API or use kegg_ko_pathway/kegg_ko_module for pathway associations.

URI: https://w3id.org/kbase/nmdc_core/KeggKoTerms

classDiagram class KeggKoTerms click KeggKoTerms href "../KeggKoTerms/" KeggKoTerms : category KeggKoTerms : definition KeggKoTerms : ko_id KeggKoTerms : name

Slots

Name	Cardinality and Range	Description	Inheritance
ko_id	1 String	KEGG Orthology ID in KXXXXX format	direct
name	0..1 String	KO name/symbol (may be empty - use KEGG API for full data)	direct
definition	0..1 String	KO functional definition	direct
category	0..1 String	KEGG functional category	direct

Identifier and Mapping Information

Annotations

property	value
source_table	kegg_ko_terms

Schema Source

from schema: https://w3id.org/kbase/nmdc_core

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/nmdc_core/KeggKoTerms
native	https://w3id.org/kbase/nmdc_core/KeggKoTerms

LinkML Source

Direct

name: KeggKoTerms
annotations:
  source_table:
    tag: source_table
    value: kegg_ko_terms
description: 'KEGG Orthology (KO) terms. KO provides functional orthologs across species
  for pathway and module membership.

  TOTAL TERMS: 8,104

  KO IDENTIFIER FORMAT: KXXXXX (K followed by 5 digits)

  USAGE: Link genes to pathways via KO assignments. Each KO represents a functional
  ortholog group - genes with the same KO likely have similar function across species.

  NOTE: Names and definitions may be sparse in this table. For full KO information,
  query KEGG API or use kegg_ko_pathway/kegg_ko_module for pathway associations.'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  ko_id:
    name: ko_id
    description: KEGG Orthology ID in KXXXXX format
    examples:
    - value: K00001
      description: First KO (alcohol dehydrogenase related)
    - value: K00002
      description: Second KO
    - value: K00003
      description: Third KO
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    domain_of:
    - KeggKoTerms
    range: string
    required: true
    pattern: K\d{5}
  name:
    name: name
    description: KO name/symbol (may be empty - use KEGG API for full data)
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  definition:
    name: definition
    description: KO functional definition
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - GoTerms
    - KeggKoTerms
    - TraitUnified
    range: string
  category:
    name: category
    description: KEGG functional category
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    domain_of:
    - KeggKoTerms
    - KeggPathwayTerms
    range: string

Induced

name: KeggKoTerms
annotations:
  source_table:
    tag: source_table
    value: kegg_ko_terms
description: 'KEGG Orthology (KO) terms. KO provides functional orthologs across species
  for pathway and module membership.

  TOTAL TERMS: 8,104

  KO IDENTIFIER FORMAT: KXXXXX (K followed by 5 digits)

  USAGE: Link genes to pathways via KO assignments. Each KO represents a functional
  ortholog group - genes with the same KO likely have similar function across species.

  NOTE: Names and definitions may be sparse in this table. For full KO information,
  query KEGG API or use kegg_ko_pathway/kegg_ko_module for pathway associations.'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  ko_id:
    name: ko_id
    description: KEGG Orthology ID in KXXXXX format
    examples:
    - value: K00001
      description: First KO (alcohol dehydrogenase related)
    - value: K00002
      description: Second KO
    - value: K00003
      description: Third KO
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    alias: ko_id
    owner: KeggKoTerms
    domain_of:
    - KeggKoTerms
    range: string
    required: true
    pattern: K\d{5}
  name:
    name: name
    description: KO name/symbol (may be empty - use KEGG API for full data)
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: name
    owner: KeggKoTerms
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  definition:
    name: definition
    description: KO functional definition
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: definition
    owner: KeggKoTerms
    domain_of:
    - GoTerms
    - KeggKoTerms
    - TraitUnified
    range: string
  category:
    name: category
    description: KEGG functional category
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    alias: category
    owner: KeggKoTerms
    domain_of:
    - KeggKoTerms
    - KeggPathwayTerms
    range: string