Class: KeggPathwayTerms

KEGG pathway definitions with category classification.

TOTAL PATHWAYS: 306

PATHWAY ID FORMATS: - ko##### - Reference pathway (organism-independent) - map##### - Map/reference pathway

MAJOR PATHWAY CATEGORIES: - Metabolism (carbohydrate, energy, lipid, nucleotide, amino acid) - Genetic Information Processing - Environmental Information Processing - Cellular Processes - Human Diseases (reference only)

URI: https://w3id.org/kbase/nmdc_core/KeggPathwayTerms

classDiagram class KeggPathwayTerms click KeggPathwayTerms href "../KeggPathwayTerms/" KeggPathwayTerms : category KeggPathwayTerms : name KeggPathwayTerms : pathway_id

Slots

Name	Cardinality and Range	Description	Inheritance
pathway_id	1 String	KEGG pathway ID (ko or map prefix)	direct
name	0..1 String	Pathway name (may be empty - use category)	direct
category	0..1 String	Pathway category (e	direct

Identifier and Mapping Information

Annotations

property	value
source_table	kegg_pathway_terms

Schema Source

from schema: https://w3id.org/kbase/nmdc_core

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/nmdc_core/KeggPathwayTerms
native	https://w3id.org/kbase/nmdc_core/KeggPathwayTerms

LinkML Source

Direct

name: KeggPathwayTerms
annotations:
  source_table:
    tag: source_table
    value: kegg_pathway_terms
description: 'KEGG pathway definitions with category classification.

  TOTAL PATHWAYS: 306

  PATHWAY ID FORMATS: - ko##### - Reference pathway (organism-independent) - map#####
  - Map/reference pathway

  MAJOR PATHWAY CATEGORIES: - Metabolism (carbohydrate, energy, lipid, nucleotide,
  amino acid) - Genetic Information Processing - Environmental Information Processing
  - Cellular Processes - Human Diseases (reference only)'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  pathway_id:
    name: pathway_id
    description: KEGG pathway ID (ko or map prefix)
    examples:
    - value: ko00010
      description: Glycolysis / Gluconeogenesis
    - value: ko00020
      description: Citrate cycle (TCA cycle)
    - value: ko00030
      description: Pentose phosphate pathway
    - value: map00010
      description: Map version of Glycolysis
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    domain_of:
    - KeggPathwayTerms
    - MetacycPathways
    range: string
    required: true
    pattern: (map|ko)\d{5}
  name:
    name: name
    description: Pathway name (may be empty - use category)
    examples:
    - value: Glycolysis / Gluconeogenesis
    - value: Citrate cycle (TCA cycle)
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  category:
    name: category
    description: Pathway category (e.g., Carbohydrate metabolism)
    examples:
    - value: Carbohydrate metabolism
    - value: Energy metabolism
    - value: Lipid metabolism
    from_schema: https://w3id.org/kbase/nmdc_core
    domain_of:
    - KeggKoTerms
    - KeggPathwayTerms
    range: string

Induced

name: KeggPathwayTerms
annotations:
  source_table:
    tag: source_table
    value: kegg_pathway_terms
description: 'KEGG pathway definitions with category classification.

  TOTAL PATHWAYS: 306

  PATHWAY ID FORMATS: - ko##### - Reference pathway (organism-independent) - map#####
  - Map/reference pathway

  MAJOR PATHWAY CATEGORIES: - Metabolism (carbohydrate, energy, lipid, nucleotide,
  amino acid) - Genetic Information Processing - Environmental Information Processing
  - Cellular Processes - Human Diseases (reference only)'
from_schema: https://w3id.org/kbase/nmdc_core
attributes:
  pathway_id:
    name: pathway_id
    description: KEGG pathway ID (ko or map prefix)
    examples:
    - value: ko00010
      description: Glycolysis / Gluconeogenesis
    - value: ko00020
      description: Citrate cycle (TCA cycle)
    - value: ko00030
      description: Pentose phosphate pathway
    - value: map00010
      description: Map version of Glycolysis
    from_schema: https://w3id.org/kbase/nmdc_core
    rank: 1000
    identifier: true
    alias: pathway_id
    owner: KeggPathwayTerms
    domain_of:
    - KeggPathwayTerms
    - MetacycPathways
    range: string
    required: true
    pattern: (map|ko)\d{5}
  name:
    name: name
    description: Pathway name (may be empty - use category)
    examples:
    - value: Glycolysis / Gluconeogenesis
    - value: Citrate cycle (TCA cycle)
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: name
    owner: KeggPathwayTerms
    domain_of:
    - AnnotationTermsUnified
    - GoTerms
    - EcTerms
    - KeggKoTerms
    - KeggPathwayTerms
    - StudyTable
    - MetabolomicsGold
    - MetacycPathways
    range: string
  category:
    name: category
    description: Pathway category (e.g., Carbohydrate metabolism)
    examples:
    - value: Carbohydrate metabolism
    - value: Energy metabolism
    - value: Lipid metabolism
    from_schema: https://w3id.org/kbase/nmdc_core
    alias: category
    owner: KeggPathwayTerms
    domain_of:
    - KeggKoTerms
    - KeggPathwayTerms
    range: string