Enum: SourceModality

Data modality from which tokens/embeddings are derived

URI: https://w3id.org/kbase/nmdc_core/SourceModality

Permissible Values

Value	Meaning	Description
system	None	System tokens ([PAD], [CLS], etc
taxonomy	None	Taxonomic composition from 16S/metagenomic classification
trait	None	Functional traits from GO term annotations
biochemical	None	Biochemical features from metabolomics
abiotic	None	Abiotic environmental measurements (pH, temperature, etc

Slots

Name	Description
source_modality	Data modality this token comes from

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/kbase/nmdc_core

LinkML Source

name: SourceModality
description: Data modality from which tokens/embeddings are derived
from_schema: https://w3id.org/kbase/nmdc_core
rank: 1000
permissible_values:
  system:
    text: system
    description: System tokens ([PAD], [CLS], etc.) not from biological data
  taxonomy:
    text: taxonomy
    description: Taxonomic composition from 16S/metagenomic classification
  trait:
    text: trait
    description: Functional traits from GO term annotations
  biochemical:
    text: biochemical
    description: Biochemical features from metabolomics
  abiotic:
    text: abiotic
    description: Abiotic environmental measurements (pH, temperature, etc.)