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Class: CAZyFamily

Carbohydrate-Active enZYme family classification. CAZy database families (GH, GT, PL, CE, AA, CBM).

URI: https://w3id.org/kbase/phagefoundry_genome_browser/CAZyFamily

classDiagram class CAZyFamily click CAZyFamily href "../CAZyFamily/" CAZyFamily : id CAZyFamily : name

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
name 0..1
String		 CAZy family name (e direct

Identifier and Mapping Information

Annotations

property value
source_table browser_cazy_family

Schema Source

  • from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/phagefoundry_genome_browser/CAZyFamily
native https://w3id.org/kbase/phagefoundry_genome_browser/CAZyFamily

LinkML Source

Direct

name: CAZyFamily
annotations:
  source_table:
    tag: source_table
    value: browser_cazy_family
description: Carbohydrate-Active enZYme family classification. CAZy database families
  (GH, GT, PL, CE, AA, CBM).
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  name:
    name: name
    description: CAZy family name (e.g., GH13, GT2)
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string

Induced

name: CAZyFamily
annotations:
  source_table:
    tag: source_table
    value: browser_cazy_family
description: Carbohydrate-Active enZYme family classification. CAZy database families
  (GH, GT, PL, CE, AA, CBM).
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    alias: id
    owner: CAZyFamily
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  name:
    name: name
    description: CAZy family name (e.g., GH13, GT2)
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: name
    owner: CAZyFamily
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string