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Class: GOTerm

Gene Ontology term for functional annotation.

URI: https://w3id.org/kbase/phagefoundry_genome_browser/GOTerm

classDiagram class GOTerm click GOTerm href "../GOTerm/" GOTerm : go_id GOTerm : id GOTerm : name

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
go_id 0..1
String		 GO term ID (GO:NNNNNNN) direct
name 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table browser_go_term

Schema Source

  • from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/phagefoundry_genome_browser/GOTerm
native https://w3id.org/kbase/phagefoundry_genome_browser/GOTerm

LinkML Source

Direct

name: GOTerm
annotations:
  source_table:
    tag: source_table
    value: browser_go_term
description: Gene Ontology term for functional annotation.
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  go_id:
    name: go_id
    description: GO term ID (GO:NNNNNNN)
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    domain_of:
    - GOTerm
    range: string
    pattern: GO:\d{7}
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string

Induced

name: GOTerm
annotations:
  source_table:
    tag: source_table
    value: browser_go_term
description: Gene Ontology term for functional annotation.
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    alias: id
    owner: GOTerm
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  go_id:
    name: go_id
    description: GO term ID (GO:NNNNNNN)
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    alias: go_id
    owner: GOTerm
    domain_of:
    - GOTerm
    range: string
    pattern: GO:\d{7}
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: name
    owner: GOTerm
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string