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Class: KEGGPathway

KEGG metabolic or signaling pathway.

URI: https://w3id.org/kbase/phagefoundry_genome_browser/KEGGPathway

classDiagram class KEGGPathway click KEGGPathway href "../KEGGPathway/" KEGGPathway : id KEGGPathway : pathway_id

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
pathway_id 0..1
String		 KEGG pathway ID direct

Identifier and Mapping Information

Annotations

property value
source_table browser_kegg_pathway

Schema Source

  • from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/phagefoundry_genome_browser/KEGGPathway
native https://w3id.org/kbase/phagefoundry_genome_browser/KEGGPathway

LinkML Source

Direct

name: KEGGPathway
annotations:
  source_table:
    tag: source_table
    value: browser_kegg_pathway
description: KEGG metabolic or signaling pathway.
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  pathway_id:
    name: pathway_id
    description: KEGG pathway ID
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    domain_of:
    - KEGGPathway
    range: string

Induced

name: KEGGPathway
annotations:
  source_table:
    tag: source_table
    value: browser_kegg_pathway
description: KEGG metabolic or signaling pathway.
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    alias: id
    owner: KEGGPathway
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  pathway_id:
    name: pathway_id
    description: KEGG pathway ID
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    alias: pathway_id
    owner: KEGGPathway
    domain_of:
    - KEGGPathway
    range: string