Class: Operon

Predicted operon (co-transcribed gene cluster).

URI: https://w3id.org/kbase/phagefoundry_genome_browser/Operon

classDiagram class Operon click Operon href "../Operon/" Operon : genome_id Operon : id Operon : name

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
name	0..1 String	direct
genome_id	0..1 Integer	direct

Identifier and Mapping Information

Annotations

property	value
source_table	browser_operon

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_genome_browser/Operon
native	https://w3id.org/kbase/phagefoundry_genome_browser/Operon

LinkML Source

Direct

name: Operon
annotations:
  source_table:
    tag: source_table
    value: browser_operon
description: Predicted operon (co-transcribed gene cluster).
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string
  genome_id:
    name: genome_id
    comments:
    - Foreign key to Genome.id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - Contig
    - Operon
    - Regulon
    - GenomeTag
    range: integer

Induced

name: Operon
annotations:
  source_table:
    tag: source_table
    value: browser_operon
description: Predicted operon (co-transcribed gene cluster).
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    identifier: true
    alias: id
    owner: Operon
    domain_of:
    - Genome
    - Contig
    - Gene
    - Protein
    - Annotation
    - CAZyFamily
    - COGClass
    - ECNumber
    - EggNOGDescription
    - GOTerm
    - KEGGOrtholog
    - KEGGPathway
    - KEGGReaction
    - Operon
    - OrthologGroup
    - Regulon
    - RegulonRegulator
    - Sample
    - SampleMetadata
    - Site
    - GenomeTag
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: name
    owner: Operon
    domain_of:
    - Genome
    - Contig
    - Protein
    - CAZyFamily
    - COGClass
    - ECNumber
    - GOTerm
    - Operon
    - OrthologGroup
    - Regulon
    - Sample
    - Site
    range: string
  genome_id:
    name: genome_id
    comments:
    - Foreign key to Genome.id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: genome_id
    owner: Operon
    domain_of:
    - Contig
    - Operon
    - Regulon
    - GenomeTag
    range: integer