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Class: ProteinCOGClass

Protein to COG class assignments

URI: https://w3id.org/kbase/phagefoundry_genome_browser/ProteinCOGClass

classDiagram class ProteinCOGClass click ProteinCOGClass href "../ProteinCOGClass/" ProteinCOGClass : cog_class_id ProteinCOGClass : protein_id

Slots

Name Cardinality and Range Description Inheritance
protein_id 0..1
Integer		 direct
cog_class_id 0..1
Integer		 direct

Identifier and Mapping Information

Annotations

property value
source_table browser_protein_cog_classes

Schema Source

  • from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/phagefoundry_genome_browser/ProteinCOGClass
native https://w3id.org/kbase/phagefoundry_genome_browser/ProteinCOGClass

LinkML Source

Direct

name: ProteinCOGClass
annotations:
  source_table:
    tag: source_table
    value: browser_protein_cog_classes
description: Protein to COG class assignments
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  protein_id:
    name: protein_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - ProteinCAZyFamily
    - ProteinCOGClass
    - ProteinECNumber
    - ProteinGOTerm
    - ProteinKEGGOrtholog
    - ProteinKEGGPathway
    - ProteinKEGGReaction
    - ProteinOrthologGroup
    - ProteinTCFamily
    range: integer
  cog_class_id:
    name: cog_class_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    domain_of:
    - ProteinCOGClass
    range: integer

Induced

name: ProteinCOGClass
annotations:
  source_table:
    tag: source_table
    value: browser_protein_cog_classes
description: Protein to COG class assignments
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  protein_id:
    name: protein_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: protein_id
    owner: ProteinCOGClass
    domain_of:
    - ProteinCAZyFamily
    - ProteinCOGClass
    - ProteinECNumber
    - ProteinGOTerm
    - ProteinKEGGOrtholog
    - ProteinKEGGPathway
    - ProteinKEGGReaction
    - ProteinOrthologGroup
    - ProteinTCFamily
    range: integer
  cog_class_id:
    name: cog_class_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    alias: cog_class_id
    owner: ProteinCOGClass
    domain_of:
    - ProteinCOGClass
    range: integer