Class: ProteinOrthologGroup

Protein to ortholog group assignments

URI: https://w3id.org/kbase/phagefoundry_genome_browser/ProteinOrthologGroup

classDiagram class ProteinOrthologGroup click ProteinOrthologGroup href "../ProteinOrthologGroup/" ProteinOrthologGroup : ortholog_group_id ProteinOrthologGroup : protein_id

Slots

Name	Cardinality and Range	Description	Inheritance
protein_id	0..1 Integer		direct
ortholog_group_id	0..1 Integer		direct

Identifier and Mapping Information

Annotations

property	value
source_table	browser_protein_ortholog_groups

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_genome_browser

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_genome_browser/ProteinOrthologGroup
native	https://w3id.org/kbase/phagefoundry_genome_browser/ProteinOrthologGroup

LinkML Source

Direct

name: ProteinOrthologGroup
annotations:
  source_table:
    tag: source_table
    value: browser_protein_ortholog_groups
description: Protein to ortholog group assignments
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  protein_id:
    name: protein_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    domain_of:
    - ProteinCAZyFamily
    - ProteinCOGClass
    - ProteinECNumber
    - ProteinGOTerm
    - ProteinKEGGOrtholog
    - ProteinKEGGPathway
    - ProteinKEGGReaction
    - ProteinOrthologGroup
    - ProteinTCFamily
    range: integer
  ortholog_group_id:
    name: ortholog_group_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    domain_of:
    - ProteinOrthologGroup
    range: integer

Induced

name: ProteinOrthologGroup
annotations:
  source_table:
    tag: source_table
    value: browser_protein_ortholog_groups
description: Protein to ortholog group assignments
from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
attributes:
  protein_id:
    name: protein_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    alias: protein_id
    owner: ProteinOrthologGroup
    domain_of:
    - ProteinCAZyFamily
    - ProteinCOGClass
    - ProteinECNumber
    - ProteinGOTerm
    - ProteinKEGGOrtholog
    - ProteinKEGGPathway
    - ProteinKEGGReaction
    - ProteinOrthologGroup
    - ProteinTCFamily
    range: integer
  ortholog_group_id:
    name: ortholog_group_id
    from_schema: https://w3id.org/kbase/phagefoundry_genome_browser
    rank: 1000
    alias: ortholog_group_id
    owner: ProteinOrthologGroup
    domain_of:
    - ProteinOrthologGroup
    range: integer