Slot: id
URI: https://w3id.org/kbase/phagefoundry_genome_browser/id
Alias: id
Applicable Classes
| Name |
Description |
Modifies Slot |
| GenomeTag |
Tags/labels for genome classification or grouping |
no |
| Operon |
Predicted operon (co-transcribed gene cluster) |
no |
| Genome |
Bacterial genome assembly with basic statistics |
no |
| Sample |
Sample/isolate metadata |
no |
| ECNumber |
Enzyme Commission number for enzymatic function |
no |
| GOTerm |
Gene Ontology term for functional annotation |
no |
| RegulonRegulator |
Transcription factor/regulator in a regulon |
no |
| Gene |
Predicted gene with coordinates and strand |
no |
| Regulon |
Regulatory network/regulon controlled by transcription factors |
no |
| EggNOGDescription |
eggNOG ortholog group functional description |
no |
| KEGGReaction |
KEGG biochemical reaction |
no |
| Protein |
Protein sequence with functional annotations |
no |
| CAZyFamily |
Carbohydrate-Active enZYme family classification |
no |
| KEGGOrtholog |
KEGG Orthology (KO) identifier for pathway mapping |
no |
| SampleMetadata |
Extended sample metadata key-value pairs |
no |
| Site |
Sampling site/location information |
no |
| OrthologGroup |
Ortholog group across genomes in the database |
no |
| Annotation |
Generic annotation record (used by browser_annotation) |
no |
| Contig |
Genome contig/scaffold with sequence and GC content |
no |
| KEGGPathway |
KEGG metabolic or signaling pathway |
no |
| COGClass |
COG (Clusters of Orthologous Groups) functional class |
no |
Properties
Mappings
| Mapping Type |
Mapped Value |
| self |
https://w3id.org/kbase/phagefoundry_genome_browser/id |
| native |
https://w3id.org/kbase/phagefoundry_genome_browser/id |
LinkML Source
name: id
alias: id
domain_of:
- Genome
- Contig
- Gene
- Protein
- Annotation
- CAZyFamily
- COGClass
- ECNumber
- EggNOGDescription
- GOTerm
- KEGGOrtholog
- KEGGPathway
- KEGGReaction
- Operon
- OrthologGroup
- Regulon
- RegulonRegulator
- Sample
- SampleMetadata
- Site
- GenomeTag
range: string