Class: FeatureInterval

Genomic intervals (coordinates) for features.

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/FeatureInterval

classDiagram class FeatureInterval click FeatureInterval href "../FeatureInterval/" FeatureInterval : feature_id FeatureInterval : id FeatureInterval : interval_id

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
feature_id	0..1 Integer	direct
interval_id	0..1 Integer	direct

Identifier and Mapping Information

Annotations

property	value
source_table	strainmodelling_feature_intervals

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_strain_modelling/FeatureInterval
native	https://w3id.org/kbase/phagefoundry_strain_modelling/FeatureInterval

LinkML Source

Direct

name: FeatureInterval
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_feature_intervals
description: Genomic intervals (coordinates) for features.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  feature_id:
    name: feature_id
    comments:
    - Foreign key to Feature.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - FeatureMetric
    - FeatureInterval
    - ProteinFamilyFeature
    range: integer
  interval_id:
    name: interval_id
    comments:
    - Foreign key to Interval.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - FeatureInterval
    range: integer

Induced

name: FeatureInterval
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_feature_intervals
description: Genomic intervals (coordinates) for features.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: FeatureInterval
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  feature_id:
    name: feature_id
    comments:
    - Foreign key to Feature.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: feature_id
    owner: FeatureInterval
    domain_of:
    - FeatureMetric
    - FeatureInterval
    - ProteinFamilyFeature
    range: integer
  interval_id:
    name: interval_id
    comments:
    - Foreign key to Interval.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: interval_id
    owner: FeatureInterval
    domain_of:
    - FeatureInterval
    range: integer