Class: Gene

Predicted gene with location and annotation.

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/Gene

classDiagram class Gene click Gene href "../Gene/" Gene : end Gene : id Gene : locus_tag Gene : product Gene : sequence_id Gene : start Gene : strand

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Integer		direct
sequence_id	0..1 Integer		direct
locus_tag	0..1 String		direct
start	0..1 Integer		direct
end	0..1 Integer		direct
strand	0..1 Integer	Strand (1 or -1)	direct
product	0..1 String	Gene product/function	direct

Identifier and Mapping Information

Annotations

property	value
source_table	strainmodelling_gene

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_strain_modelling/Gene
native	https://w3id.org/kbase/phagefoundry_strain_modelling/Gene

LinkML Source

Direct

name: Gene
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_gene
description: Predicted gene with location and annotation.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  sequence_id:
    name: sequence_id
    comments:
    - Foreign key to Sequence.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    - Interval
    range: integer
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    range: string
  start:
    name: start
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    - Interval
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    - Interval
    range: integer
  strand:
    name: strand
    description: Strand (1 or -1)
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    range: integer
  product:
    name: product
    description: Gene product/function
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Gene
    range: string

Induced

name: Gene
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_gene
description: Predicted gene with location and annotation.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: Gene
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  sequence_id:
    name: sequence_id
    comments:
    - Foreign key to Sequence.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: sequence_id
    owner: Gene
    domain_of:
    - Gene
    - Interval
    range: integer
  locus_tag:
    name: locus_tag
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: locus_tag
    owner: Gene
    domain_of:
    - Gene
    range: string
  start:
    name: start
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: start
    owner: Gene
    domain_of:
    - Gene
    - Interval
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: end
    owner: Gene
    domain_of:
    - Gene
    - Interval
    range: integer
  strand:
    name: strand
    description: Strand (1 or -1)
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: strand
    owner: Gene
    domain_of:
    - Gene
    range: integer
  product:
    name: product
    description: Gene product/function
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: product
    owner: Gene
    domain_of:
    - Gene
    range: string