Class: Genome

Genome assembly for an organism.

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/Genome

classDiagram class Genome click Genome href "../Genome/" Genome : id Genome : name Genome : organism_id Genome : size

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Integer		direct
organism_id	0..1 Integer		direct
name	0..1 String	Genome name/accession	direct
size	0..1 Integer	Genome size in base pairs	direct

Identifier and Mapping Information

Annotations

property	value
source_table	strainmodelling_genome

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_strain_modelling/Genome
native	https://w3id.org/kbase/phagefoundry_strain_modelling/Genome

LinkML Source

Direct

name: Genome
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_genome
description: Genome assembly for an organism.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  organism_id:
    name: organism_id
    comments:
    - Foreign key to Organism.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - OrganismMetadata
    - Genome
    range: integer
  name:
    name: name
    description: Genome name/accession
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - Organism
    - Genome
    - GenomeSet
    - Sequence
    - Experiment
    - Feature
    - ProteinFamily
    range: string
  size:
    name: size
    description: Genome size in base pairs
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Genome
    range: integer

Induced

name: Genome
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_genome
description: Genome assembly for an organism.
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: Genome
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  organism_id:
    name: organism_id
    comments:
    - Foreign key to Organism.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: organism_id
    owner: Genome
    domain_of:
    - OrganismMetadata
    - Genome
    range: integer
  name:
    name: name
    description: Genome name/accession
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: name
    owner: Genome
    domain_of:
    - Organism
    - Genome
    - GenomeSet
    - Sequence
    - Experiment
    - Feature
    - ProteinFamily
    range: string
  size:
    name: size
    description: Genome size in base pairs
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: size
    owner: Genome
    domain_of:
    - Genome
    range: integer