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Class: Interaction

Phage-host interaction data (infection, resistance, etc.).

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/Interaction

classDiagram class Interaction click Interaction href "../Interaction/" Interaction : host_id Interaction : id Interaction : interaction_type Interaction : phage_id

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
phage_id 0..1
Integer		 Phage identifier direct
host_id 0..1
Integer		 Host organism identifier direct
interaction_type 0..1
String		 Type of interaction (infection, resistance, etc direct

Identifier and Mapping Information

Annotations

property value
source_table strainmodelling_interaction

Schema Source

  • from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/phagefoundry_strain_modelling/Interaction
native https://w3id.org/kbase/phagefoundry_strain_modelling/Interaction

LinkML Source

Direct

name: Interaction
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_interaction
description: Phage-host interaction data (infection, resistance, etc.).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  phage_id:
    name: phage_id
    description: Phage identifier
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Interaction
    range: integer
  host_id:
    name: host_id
    description: Host organism identifier
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Interaction
    range: integer
  interaction_type:
    name: interaction_type
    description: Type of interaction (infection, resistance, etc.)
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Interaction
    range: string

Induced

name: Interaction
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_interaction
description: Phage-host interaction data (infection, resistance, etc.).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: Interaction
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  phage_id:
    name: phage_id
    description: Phage identifier
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: phage_id
    owner: Interaction
    domain_of:
    - Interaction
    range: integer
  host_id:
    name: host_id
    description: Host organism identifier
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: host_id
    owner: Interaction
    domain_of:
    - Interaction
    range: integer
  interaction_type:
    name: interaction_type
    description: Type of interaction (infection, resistance, etc.)
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: interaction_type
    owner: Interaction
    domain_of:
    - Interaction
    range: string