Class: Interval

Genomic interval (coordinate range).

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/Interval

classDiagram class Interval click Interval href "../Interval/" Interval : end Interval : id Interval : sequence_id Interval : start

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
sequence_id	0..1 Integer	direct
start	0..1 Integer	direct
end	0..1 Integer	direct

Identifier and Mapping Information

Annotations

property	value
source_table	strainmodelling_interval

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_strain_modelling/Interval
native	https://w3id.org/kbase/phagefoundry_strain_modelling/Interval

LinkML Source

Direct

name: Interval
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_interval
description: Genomic interval (coordinate range).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  sequence_id:
    name: sequence_id
    comments:
    - Foreign key to Sequence.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - Gene
    - Interval
    range: integer
  start:
    name: start
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - Gene
    - Interval
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - Gene
    - Interval
    range: integer

Induced

name: Interval
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_interval
description: Genomic interval (coordinate range).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: Interval
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  sequence_id:
    name: sequence_id
    comments:
    - Foreign key to Sequence.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: sequence_id
    owner: Interval
    domain_of:
    - Gene
    - Interval
    range: integer
  start:
    name: start
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: start
    owner: Interval
    domain_of:
    - Gene
    - Interval
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: end
    owner: Interval
    domain_of:
    - Gene
    - Interval
    range: integer