Class: Sequence

DNA/RNA sequence (contig, chromosome, or plasmid).

URI: https://w3id.org/kbase/phagefoundry_strain_modelling/Sequence

classDiagram class Sequence click Sequence href "../Sequence/" Sequence : genome_id Sequence : id Sequence : length Sequence : name

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Integer		direct
genome_id	0..1 Integer		direct
name	0..1 String		direct
length	0..1 Integer	Sequence length in base pairs	direct

Identifier and Mapping Information

Annotations

property	value
source_table	strainmodelling_sequence

Schema Source

from schema: https://w3id.org/kbase/phagefoundry_strain_modelling

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/kbase/phagefoundry_strain_modelling/Sequence
native	https://w3id.org/kbase/phagefoundry_strain_modelling/Sequence

LinkML Source

Direct

name: Sequence
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_sequence
description: DNA/RNA sequence (contig, chromosome, or plasmid).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  genome_id:
    name: genome_id
    comments:
    - Foreign key to Genome.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - GenomeSetGenome
    - Sequence
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    domain_of:
    - Organism
    - Genome
    - GenomeSet
    - Sequence
    - Experiment
    - Feature
    - ProteinFamily
    range: string
  length:
    name: length
    description: Sequence length in base pairs
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    domain_of:
    - Sequence
    range: integer

Induced

name: Sequence
annotations:
  source_table:
    tag: source_table
    value: strainmodelling_sequence
description: DNA/RNA sequence (contig, chromosome, or plasmid).
from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
attributes:
  id:
    name: id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    identifier: true
    alias: id
    owner: Sequence
    domain_of:
    - Organism
    - OrganismMetadata
    - Genome
    - GenomeSet
    - Sequence
    - Gene
    - Experiment
    - ExperimentMetadata
    - ExperimentMetric
    - Feature
    - FeatureMetric
    - FeatureInterval
    - Interaction
    - Interval
    - ProteinFamily
    range: integer
    required: true
  genome_id:
    name: genome_id
    comments:
    - Foreign key to Genome.id
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: genome_id
    owner: Sequence
    domain_of:
    - GenomeSetGenome
    - Sequence
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    alias: name
    owner: Sequence
    domain_of:
    - Organism
    - Genome
    - GenomeSet
    - Sequence
    - Experiment
    - Feature
    - ProteinFamily
    range: string
  length:
    name: length
    description: Sequence length in base pairs
    from_schema: https://w3id.org/kbase/phagefoundry_strain_modelling
    rank: 1000
    alias: length
    owner: Sequence
    domain_of:
    - Sequence
    range: integer