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Class: Microbiome

URI: comet:Microbiome

classDiagram class Microbiome click Microbiome href "../Microbiome" OrganismPopulation <|-- Microbiome click OrganismPopulation href "../OrganismPopulation" Microbiome : case_or_control Microbiome --> "0..1" CaseOrControlEnum : case_or_control click CaseOrControlEnum href "../CaseOrControlEnum" Microbiome : classification Microbiome --> "0..1" Concept : classification click Concept href "../Concept" Microbiome : description Microbiome : has_location Microbiome --> "0..1" Location : has_location click Location href "../Location" Microbiome : has_time Microbiome --> "0..1" Duration : has_time click Duration href "../Duration" Microbiome : id Microbiome : metadata Microbiome --> "0..1" CreationHistory : metadata click CreationHistory href "../CreationHistory" Microbiome : name Microbiome : ontology_types Microbiome --> "*" Concept : ontology_types click Concept href "../Concept" Microbiome : properties Microbiome --> "*" AttributeValue : properties click AttributeValue href "../AttributeValue" Microbiome : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
properties *
AttributeValue		 Observable
case_or_control 0..1
CaseOrControlEnum		 Observable
id 1
Uriorcurie		 A unique identifier for a thing Thing
name 0..1
String		 A human-readable name for a thing Thing
description 0..1
String		 A human-readable description for a thing Thing
type 0..1
String		 A type for a thing Thing
classification 0..1
Concept		 A precise classification of the thing, using a concept from an ontology, cont... Thing
ontology_types *
Concept		 A collection of concepts that help to classify the thing, using concepts from... Thing
has_location 0..1
Location		 Thing
has_time 0..1
Duration		 Thing
metadata 0..1
CreationHistory		 Thing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/comet

Mappings

Mapping Type Mapped Value
self comet:Microbiome
native comet:Microbiome

LinkML Source

Direct

name: Microbiome
from_schema: https://w3id.org/comet
is_a: OrganismPopulation

Induced

name: Microbiome
from_schema: https://w3id.org/comet
is_a: OrganismPopulation
attributes:
  properties:
    name: properties
    from_schema: https://w3id.org/comet/core
    alias: properties
    owner: Microbiome
    domain_of:
    - Observable
    - Event
    range: AttributeValue
    multivalued: true
    inlined: true
    inlined_as_list: true
  case_or_control:
    name: case_or_control
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: case_or_control
    owner: Microbiome
    domain_of:
    - Observable
    range: CaseOrControlEnum
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/comet
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Microbiome
    domain_of:
    - Thing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/comet
    exact_mappings:
    - rdfs:label
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Microbiome
    domain_of:
    - Thing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/comet
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Microbiome
    domain_of:
    - Thing
    - TimePoint
    - CreationHistoryAction
    range: string
  type:
    name: type
    description: A type for a thing. The range of this should be a class within the
      schema. It is intended for schema-based classification. Anything beneath the
      shoreline of the schema should use `classification`.
    from_schema: https://w3id.org/comet
    rank: 1000
    designates_type: true
    alias: type
    owner: Microbiome
    domain_of:
    - Thing
    range: string
  classification:
    name: classification
    description: A precise classification of the thing, using a concept from an ontology,
      controlled vocabulary, thesaurus, or taxonomy. Some schema classes may choose
      to restrict the range of values which this slot can take, using `values_from`,
      or bindings.
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: classification
    owner: Microbiome
    domain_of:
    - Thing
    range: Concept
  ontology_types:
    name: ontology_types
    description: A collection of concepts that help to classify the thing, using concepts
      from an ontolology,  thesaurus, or taxonomy.
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: ontology_types
    owner: Microbiome
    domain_of:
    - Thing
    range: Concept
    multivalued: true
  has_location:
    name: has_location
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: has_location
    owner: Microbiome
    domain_of:
    - Thing
    range: Location
  has_time:
    name: has_time
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: has_time
    owner: Microbiome
    domain_of:
    - Thing
    - Observation
    - Event
    - Investigation
    - Relationship
    range: Duration
  metadata:
    name: metadata
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: metadata
    owner: Microbiome
    domain_of:
    - Thing
    range: CreationHistory