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Class: Observation

URI: comet:Observation

classDiagram class Observation click Observation href "../Observation" InvestigativeEntity <|-- Observation click InvestigativeEntity href "../InvestigativeEntity" Observation : classification Observation --> "0..1" Concept : classification click Concept href "../Concept" Observation : data_used Observation --> "0..1" DataObject : data_used click DataObject href "../DataObject" Observation : derived_from Observation --> "*" Observation : derived_from click Observation href "../Observation" Observation : description Observation : device_used Observation --> "0..1" Device : device_used click Device href "../Device" Observation : has_location Observation --> "0..1" Location : has_location click Location href "../Location" Observation : has_time Observation --> "0..1" Duration : has_time click Duration href "../Duration" Observation : id Observation : is_about Observation --> "0..1" Observable : is_about click Observable href "../Observable" Observation : metadata Observation --> "0..1" CreationHistory : metadata click CreationHistory href "../CreationHistory" Observation : method Observation --> "0..1" Concept : method click Concept href "../Concept" Observation : name Observation : ontology_types Observation --> "*" Concept : ontology_types click Concept href "../Concept" Observation : part_of Observation --> "0..1" Investigation : part_of click Investigation href "../Investigation" Observation : performer Observation --> "0..1" Agent : performer click Agent href "../Agent" Observation : procedure_configuration Observation --> "0..1" ProcedureConfiguration : procedure_configuration click ProcedureConfiguration href "../ProcedureConfiguration" Observation : procedure_used Observation --> "0..1" Procedure : procedure_used click Procedure href "../Procedure" Observation : result Observation --> "0..1" AttributeValue : result click AttributeValue href "../AttributeValue" Observation : sample_used Observation --> "0..1" Sample : sample_used click Sample href "../Sample" Observation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_time 0..1
Duration		 direct
is_about 0..1
Observable		 direct
result 0..1
AttributeValue		 direct
part_of 0..1
Investigation		 direct
performer 0..1
Agent		 direct
method 0..1
Concept		 direct
device_used 0..1
Device		 direct
procedure_used 0..1
Procedure		 direct
procedure_configuration 0..1
ProcedureConfiguration		 direct
sample_used 0..1
Sample		 direct
data_used 0..1
DataObject		 direct
derived_from *
Observation		 direct
id 1
Uriorcurie		 A unique identifier for a thing Thing
name 0..1
String		 A human-readable name for a thing Thing
description 0..1
String		 A human-readable description for a thing Thing
type 0..1
String		 A type for a thing Thing
classification 0..1
Concept		 A precise classification of the thing, using a concept from an ontology, cont... Thing
ontology_types *
Concept		 A collection of concepts that help to classify the thing, using concepts from... Thing
has_location 0..1
Location		 Thing
metadata 0..1
CreationHistory		 Thing

Usages

used by used in type used
Observation derived_from range Observation
Dataset observations range Observation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/comet

Mappings

Mapping Type Mapped Value
self comet:Observation
native comet:Observation
close schema:PropertyValue, oboe-core:Measurement

LinkML Source

Direct

name: Observation
from_schema: https://w3id.org/comet
close_mappings:
- schema:PropertyValue
- oboe-core:Measurement
is_a: InvestigativeEntity
slots:
- has_time
attributes:
  is_about:
    name: is_about
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - oboe-core:ofEntity
    rank: 1000
    domain_of:
    - Observation
    range: Observable
  result:
    name: result
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - om:result
    rank: 1000
    domain_of:
    - Observation
    range: AttributeValue
  part_of:
    name: part_of
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Investigation
  performer:
    name: performer
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - prov:wasAssociatedWith
    - fhir:performer
    rank: 1000
    domain_of:
    - Observation
    range: Agent
  method:
    name: method
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Concept
  device_used:
    name: device_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Device
  procedure_used:
    name: procedure_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Procedure
  procedure_configuration:
    name: procedure_configuration
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: ProcedureConfiguration
  sample_used:
    name: sample_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Sample
  data_used:
    name: data_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: DataObject
  derived_from:
    name: derived_from
    from_schema: https://w3id.org/comet/core
    rank: 1000
    domain_of:
    - Observation
    range: Observation
    multivalued: true

Induced

name: Observation
from_schema: https://w3id.org/comet
close_mappings:
- schema:PropertyValue
- oboe-core:Measurement
is_a: InvestigativeEntity
attributes:
  is_about:
    name: is_about
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - oboe-core:ofEntity
    rank: 1000
    alias: is_about
    owner: Observation
    domain_of:
    - Observation
    range: Observable
  result:
    name: result
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - om:result
    rank: 1000
    alias: result
    owner: Observation
    domain_of:
    - Observation
    range: AttributeValue
  part_of:
    name: part_of
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: part_of
    owner: Observation
    domain_of:
    - Observation
    range: Investigation
  performer:
    name: performer
    from_schema: https://w3id.org/comet/core
    exact_mappings:
    - prov:wasAssociatedWith
    - fhir:performer
    rank: 1000
    alias: performer
    owner: Observation
    domain_of:
    - Observation
    range: Agent
  method:
    name: method
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: method
    owner: Observation
    domain_of:
    - Observation
    range: Concept
  device_used:
    name: device_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: device_used
    owner: Observation
    domain_of:
    - Observation
    range: Device
  procedure_used:
    name: procedure_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: procedure_used
    owner: Observation
    domain_of:
    - Observation
    range: Procedure
  procedure_configuration:
    name: procedure_configuration
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: procedure_configuration
    owner: Observation
    domain_of:
    - Observation
    range: ProcedureConfiguration
  sample_used:
    name: sample_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: sample_used
    owner: Observation
    domain_of:
    - Observation
    range: Sample
  data_used:
    name: data_used
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: data_used
    owner: Observation
    domain_of:
    - Observation
    range: DataObject
  derived_from:
    name: derived_from
    from_schema: https://w3id.org/comet/core
    rank: 1000
    alias: derived_from
    owner: Observation
    domain_of:
    - Observation
    range: Observation
    multivalued: true
  has_time:
    name: has_time
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: has_time
    owner: Observation
    domain_of:
    - Thing
    - Observation
    - Event
    - Investigation
    - Relationship
    range: Duration
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/comet
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Observation
    domain_of:
    - Thing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/comet
    exact_mappings:
    - rdfs:label
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Observation
    domain_of:
    - Thing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/comet
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Observation
    domain_of:
    - Thing
    - TimePoint
    - CreationHistoryAction
    range: string
  type:
    name: type
    description: A type for a thing. The range of this should be a class within the
      schema. It is intended for schema-based classification. Anything beneath the
      shoreline of the schema should use `classification`.
    from_schema: https://w3id.org/comet
    rank: 1000
    designates_type: true
    alias: type
    owner: Observation
    domain_of:
    - Thing
    range: string
  classification:
    name: classification
    description: A precise classification of the thing, using a concept from an ontology,
      controlled vocabulary, thesaurus, or taxonomy. Some schema classes may choose
      to restrict the range of values which this slot can take, using `values_from`,
      or bindings.
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: classification
    owner: Observation
    domain_of:
    - Thing
    range: Concept
  ontology_types:
    name: ontology_types
    description: A collection of concepts that help to classify the thing, using concepts
      from an ontolology,  thesaurus, or taxonomy.
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: ontology_types
    owner: Observation
    domain_of:
    - Thing
    range: Concept
    multivalued: true
  has_location:
    name: has_location
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: has_location
    owner: Observation
    domain_of:
    - Thing
    range: Location
  metadata:
    name: metadata
    from_schema: https://w3id.org/comet
    rank: 1000
    alias: metadata
    owner: Observation
    domain_of:
    - Thing
    range: CreationHistory