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Class: ProteinIdentifier

URI: edd:ProteinIdentifier

classDiagram class ProteinIdentifier click ProteinIdentifier href "../ProteinIdentifier" ProteinIdentifier : accession_code ProteinIdentifier : accession_id ProteinIdentifier : db_instance ProteinIdentifier --> "0..1" DbInstanceEnum : db_instance click DbInstanceEnum href "../DbInstanceEnum" ProteinIdentifier : length ProteinIdentifier : mass ProteinIdentifier : measurementtype_ptr_id

Slots

Name Cardinality and Range Description Inheritance
measurementtype_ptr_id 0..1
Integer		 direct
accession_id *
String		 direct
length 0..1
Float		 direct
mass *
String		 direct
accession_code 0..1
String		 direct
db_instance 0..1
DbInstanceEnum		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/edd

Mappings

Mapping Type Mapped Value
self edd:ProteinIdentifier
native edd:ProteinIdentifier

LinkML Source

Direct

name: ProteinIdentifier
from_schema: https://w3id.org/edd
slots:
- measurementtype_ptr_id
- accession_id
- length
- mass
- accession_code
- db_instance

Induced

name: ProteinIdentifier
from_schema: https://w3id.org/edd
attributes:
  measurementtype_ptr_id:
    name: measurementtype_ptr_id
    examples:
    - value: '260597'
    from_schema: https://w3id.org/edd
    rank: 1000
    alias: measurementtype_ptr_id
    owner: ProteinIdentifier
    domain_of:
    - gene_identifier
    - Metabolite
    - ProteinIdentifier
    range: integer
  accession_id:
    name: accession_id
    examples:
    - value: '575'
    from_schema: https://w3id.org/edd
    rank: 1000
    multivalued: true
    alias: accession_id
    owner: ProteinIdentifier
    domain_of:
    - ProteinIdentifier
    range: string
  length:
    name: length
    examples:
    - value: '62153.00000'
    from_schema: https://w3id.org/edd
    rank: 1000
    alias: length
    owner: ProteinIdentifier
    domain_of:
    - ProteinIdentifier
    range: float
  mass:
    name: mass
    examples:
    - value: JDK_p00002
    from_schema: https://w3id.org/edd
    rank: 1000
    multivalued: true
    alias: mass
    owner: ProteinIdentifier
    domain_of:
    - ProteinIdentifier
    range: string
  accession_code:
    name: accession_code
    examples:
    - value: P77495
    from_schema: https://w3id.org/edd
    rank: 1000
    alias: accession_code
    owner: ProteinIdentifier
    domain_of:
    - ProteinIdentifier
    range: string
  db_instance:
    name: db_instance
    examples:
    - value: metadata_plus.jbei.sql
    from_schema: https://w3id.org/edd
    rank: 1000
    alias: db_instance
    owner: ProteinIdentifier
    domain_of:
    - gene_identifier
    - MeasurementType
    - MeasurementUnit
    - Metabolite
    - MetadataType
    - ProteinIdentifier
    - ProteinStrain
    - Protocol
    - Strain
    range: db_instance_enum