Class: ImagingPreparationProtocol

URI: hca:ImagingPreparationProtocol

Attributes

Own

• ➞describedBy _1..1
  • Description: The URL reference to the schema.
  • Range: String
• ➞schema_version _0..1
  • Description: The version number of the schema in major.minor.patch format.
  • Range: String
• ➞schema_type _1..1
  • Description: The type of the metadata schema entity.
  • Range: ImagingPreparationProtocol_schema_type_options
• ➞provenance _0..1
  • Description: Provenance information provided by the system.
  • Range: Provenance
• ➞protocol_core _1..1
  • Description: Core protocol-level information.
  • Range: ProtocolCore
• ➞fresh_slicing_method _0..1
  • Description: The method by which fresh tissue was sliced.
  • Range: String
• ➞imaged_slice_thickness _0..1
  • Description: Thickness of the imaged slice in micrometres.
  • Range: Float
• ➞final_slicing_method _0..1
  • Description: The method by which the final slice was obtained.
  • Range: String
• ➞post_resection_interval _0..1
  • Description: Length of time between surgical resection and fresh slicing of tissue.
  • Range: Float
• ➞post_resection_interval_unit _0..1
  • Description: The unit of time in which the post resection interval is expressed.
  • Range: TimeUnitOntology
• ➞pre_final_slice_preservation_method _0..1
  • Description: Tissue preservation method used prior to final slicing.
  • Range: PreservationStorage
• ➞post_final_slicing_interval _0..1
  • Description: Length of time between secondary slicing and hybridization.
  • Range: Float
• ➞post_final_slicing_interval_unit _0..1
  • Description: The unit of time in which the post final slicing interval is expressed.
  • Range: TimeUnitOntology
• ➞fiducial_marker _0..1
  • Description: Fiducial markers for the alignment of images taken across multiple rounds of imaging.
  • Range: String
• ➞expansion_factor _0..1
  • Description: Factor by which the imaged tissue was expanded in one dimension.
  • Range: Float
• ➞permeabilisation_time _0..1
  • Description: The permeabilisation time in time units that the tissue was exposed to.
  • Range: Float
• ➞permeabilisation_time_unit _0..1
  • Description: The unit in which permeabilisation time is expressed.
  • Range: TimeUnitOntology