Class: ImagingProtocol

URI: hca:ImagingProtocol

Attributes

Own

• ➞describedBy _1..1
  • Description: The URL reference to the schema.
  • Range: String
• ➞schema_version _0..1
  • Description: The version number of the schema in major.minor.patch format.
  • Range: String
• ➞schema_type _1..1
  • Description: The type of the metadata schema entity.
  • Range: ImagingProtocol_schema_type_options
• ➞provenance _0..1
  • Description: Provenance information provided by the system.
  • Range: Provenance
• ➞protocol_core _1..1
  • Description: Core protocol-level information.
  • Range: ProtocolCore
• ➞microscope_setup_description _0..1
  • Description: Description of the microscope setup.
  • Range: String
• ➞microscopy_technique _1..1
  • Description: The type of microscopy.
  • Range: MicroscopyOntology
• ➞magnification _1..1
  • Description: Magnification of the objective used for imaging.
  • Range: String
• ➞numerical_aperture _0..1
  • Description: Numerical aperture of the objective.
  • Range: Float
• ➞immersion_medium_type _0..1
  • Description: Immersion medium used for imaging.
  • Range: String
• ➞immersion_medium_refractive_index _0..1
  • Description: Refractive index of the immersion medium used for imaging.
  • Range: Float
• ➞pixel_size _0..1
  • Description: Pixel size in nanometers.
  • Range: Float
• ➞number_of_tiles _0..1
  • Description: Number of XY tiles in the experiment.
  • Range: Integer
• ➞tile_size_y _0..1
  • Description: Y size of the tile in micrometers.
  • Range: Float
• ➞tile_size_x _0..1
  • Description: X size of the tile in micrometers.
  • Range: Float
• ➞z_stack_step_size _0..1
  • Description: Z-stack step size in nanometers.
  • Range: Float
• ➞number_of_z_steps _0..1
  • Description: Number of steps in a Z stack.
  • Range: Integer
• ➞overlapping_tiles _0..1
  • Description: Whether tiles were collected with overlap.
  • Range: ImagingProtocol_overlapping_tiles_options
• ➞channel _0..*
  • Range: Channel
• ➞probe _0..*
  • Range: Probe