Class: Biosample

A tissue sample or other physical specimen

classDiagram class Biosample Biosample : anatomy Biosample : assay_type Biosample : creation_time Biosample : id_namespace Biosample : local_id Biosample : persistent_id Biosample : project_id_namespace Biosample : project_local_id

Slots

Name	Range	Cardinality	Description	Info
id_namespace	IdNamespace	1..1	A CFDE-cleared identifier representing the top-level data space containing this biosample [part 1 of 2-component composite primary key]	.
local_id	xsd:string	1..1	An identifier representing this biosample, unique within this id_namespace [part 2 of 2-component composite primary key]	.
project_id_namespace	xsd:string	1..1	The id_namespace of the primary project within which this biosample was created [part 1 of 2-component composite foreign key]	.
project_local_id	xsd:string	1..1	The local_id of the primary project within which this biosample was created [part 2 of 2-component composite foreign key]	.
persistent_id	xsd:string	0..1	A persistent, resolvable (not necessarily retrievable) URI or compact ID permanently attached to this biosample	.
creation_time	xsd:dateTime	0..1	An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting this biosample's creation time: YYYY-MM-DDTHH:MM:SS±NN:NN	.
assay_type	AssayType	0..1	An OBI CV term ID (from the 'planned process' branch of the vocabulary, excluding the 'assay' subtree) describing the preparation method that produced this biosample	.
anatomy	Anatomy	0..1	An UBERON CV term ID used to locate the origin of this biosample within the physiology of its source or host organism	.

Usages

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/cfde

Mappings

Mapping Type	Mapped Value
self	['cfde_schema:Biosample']
native	['cfde_schema:Biosample']

LinkML Specification

Direct

name: biosample
description: A tissue sample or other physical specimen
title: biosample
from_schema: https://w3id.org/linkml/cfde
attributes:
  id_namespace:
    name: id_namespace
    description: A CFDE-cleared identifier representing the top-level data space containing
      this biosample [part 1 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    range: id_namespace
    required: true
  local_id:
    name: local_id
    description: An identifier representing this biosample, unique within this id_namespace
      [part 2 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  project_id_namespace:
    name: project_id_namespace
    description: The id_namespace of the primary project within which this biosample
      was created [part 1 of 2-component composite foreign key]
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  project_local_id:
    name: project_local_id
    description: The local_id of the primary project within which this biosample was
      created [part 2 of 2-component composite foreign key]
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  persistent_id:
    name: persistent_id
    description: A persistent, resolvable (not necessarily retrievable) URI or compact
      ID permanently attached to this biosample
    from_schema: https://w3id.org/linkml/cfde
    range: string
  creation_time:
    name: creation_time
    description: 'An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting
      this biosample''s creation time: YYYY-MM-DDTHH:MM:SS±NN:NN'
    from_schema: https://w3id.org/linkml/cfde
    range: datetime
  assay_type:
    name: assay_type
    description: An OBI CV term ID (from the 'planned process' branch of the vocabulary,
      excluding the 'assay' subtree) describing the preparation method that produced
      this biosample
    from_schema: https://w3id.org/linkml/cfde
    range: assay_type
  anatomy:
    name: anatomy
    description: An UBERON CV term ID used to locate the origin of this biosample
      within the physiology of its source or host organism
    from_schema: https://w3id.org/linkml/cfde
    range: anatomy
unique_keys:
  biosample_primary_key:
    unique_key_name: biosample_primary_key
    unique_key_slots:
    - '[''id_namespace'', ''local_id'']'

Induced

name: biosample
description: A tissue sample or other physical specimen
title: biosample
from_schema: https://w3id.org/linkml/cfde
attributes:
  id_namespace:
    name: id_namespace
    description: A CFDE-cleared identifier representing the top-level data space containing
      this biosample [part 1 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    alias: id_namespace
    owner: biosample
    range: id_namespace
    required: true
  local_id:
    name: local_id
    description: An identifier representing this biosample, unique within this id_namespace
      [part 2 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    alias: local_id
    owner: biosample
    range: string
    required: true
  project_id_namespace:
    name: project_id_namespace
    description: The id_namespace of the primary project within which this biosample
      was created [part 1 of 2-component composite foreign key]
    from_schema: https://w3id.org/linkml/cfde
    alias: project_id_namespace
    owner: biosample
    range: string
    required: true
  project_local_id:
    name: project_local_id
    description: The local_id of the primary project within which this biosample was
      created [part 2 of 2-component composite foreign key]
    from_schema: https://w3id.org/linkml/cfde
    alias: project_local_id
    owner: biosample
    range: string
    required: true
  persistent_id:
    name: persistent_id
    description: A persistent, resolvable (not necessarily retrievable) URI or compact
      ID permanently attached to this biosample
    from_schema: https://w3id.org/linkml/cfde
    alias: persistent_id
    owner: biosample
    range: string
  creation_time:
    name: creation_time
    description: 'An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting
      this biosample''s creation time: YYYY-MM-DDTHH:MM:SS±NN:NN'
    from_schema: https://w3id.org/linkml/cfde
    alias: creation_time
    owner: biosample
    range: datetime
  assay_type:
    name: assay_type
    description: An OBI CV term ID (from the 'planned process' branch of the vocabulary,
      excluding the 'assay' subtree) describing the preparation method that produced
      this biosample
    from_schema: https://w3id.org/linkml/cfde
    alias: assay_type
    owner: biosample
    range: assay_type
  anatomy:
    name: anatomy
    description: An UBERON CV term ID used to locate the origin of this biosample
      within the physiology of its source or host organism
    from_schema: https://w3id.org/linkml/cfde
    alias: anatomy
    owner: biosample
    range: anatomy
unique_keys:
  biosample_primary_key:
    unique_key_name: biosample_primary_key
    unique_key_slots:
    - '[''id_namespace'', ''local_id'']'