Class: Collection

A grouping of C2M2 files, biosamples and/or subjects

classDiagram class Collection Collection : abbreviation Collection : creation_time Collection : description Collection : has_time_series_data Collection : id_namespace Collection : local_id Collection : persistent_id

Slots

Name	Range	Cardinality	Description	Info
id_namespace	IdNamespace	1..1	A CFDE-cleared identifier representing the top-level data space containing this collection [part 1 of 2-component composite primary key]	.
local_id	xsd:string	1..1	An identifier representing this collection, unique within this id_namespace [part 2 of 2-component composite primary key]	.
persistent_id	xsd:string	0..1	A persistent, resolvable (not necessarily retrievable) URI or compact ID permanently attached to this collection	.
creation_time	xsd:dateTime	0..1	An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting this collection's creation time: YYYY-MM-DDTHH:MM:SS±NN:NN	.
abbreviation	xsd:string	0..1	A very short display label for this collection	.
description	xsd:string	0..1	A human-readable description of this collection	.
has_time_series_data	xsd:boolean	0..1	Does this collection contain time-series data? (allowed values: [true	false

Usages

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/cfde

Mappings

Mapping Type	Mapped Value
self	['cfde_schema:Collection']
native	['cfde_schema:Collection']

LinkML Specification

Direct

name: collection
description: A grouping of C2M2 files, biosamples and/or subjects
title: collection
from_schema: https://w3id.org/linkml/cfde
attributes:
  id_namespace:
    name: id_namespace
    description: A CFDE-cleared identifier representing the top-level data space containing
      this collection [part 1 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    range: id_namespace
    required: true
  local_id:
    name: local_id
    description: An identifier representing this collection, unique within this id_namespace
      [part 2 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  persistent_id:
    name: persistent_id
    description: A persistent, resolvable (not necessarily retrievable) URI or compact
      ID permanently attached to this collection
    from_schema: https://w3id.org/linkml/cfde
    range: string
  creation_time:
    name: creation_time
    description: 'An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting
      this collection''s creation time: YYYY-MM-DDTHH:MM:SS±NN:NN'
    from_schema: https://w3id.org/linkml/cfde
    range: datetime
  abbreviation:
    name: abbreviation
    description: A very short display label for this collection
    from_schema: https://w3id.org/linkml/cfde
    range: string
    pattern: ^[a-zA-Z0-9_]+$
  description:
    name: description
    description: A human-readable description of this collection
    from_schema: https://w3id.org/linkml/cfde
    range: string
  has_time_series_data:
    name: has_time_series_data
    description: 'Does this collection contain time-series data? (allowed values:
      [true|false|null] -- true == yes, contains time-series data; false == no, doesn''t
      contain time-series data; null == no info provided)'
    from_schema: https://w3id.org/linkml/cfde
    range: boolean
unique_keys:
  name_unique_key:
    unique_key_name: name_unique_key
    unique_key_slots:
    - name
  collection_primary_key:
    unique_key_name: collection_primary_key
    unique_key_slots:
    - '[''id_namespace'', ''local_id'']'

Induced

name: collection
description: A grouping of C2M2 files, biosamples and/or subjects
title: collection
from_schema: https://w3id.org/linkml/cfde
attributes:
  id_namespace:
    name: id_namespace
    description: A CFDE-cleared identifier representing the top-level data space containing
      this collection [part 1 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    alias: id_namespace
    owner: collection
    range: id_namespace
    required: true
  local_id:
    name: local_id
    description: An identifier representing this collection, unique within this id_namespace
      [part 2 of 2-component composite primary key]
    from_schema: https://w3id.org/linkml/cfde
    alias: local_id
    owner: collection
    range: string
    required: true
  persistent_id:
    name: persistent_id
    description: A persistent, resolvable (not necessarily retrievable) URI or compact
      ID permanently attached to this collection
    from_schema: https://w3id.org/linkml/cfde
    alias: persistent_id
    owner: collection
    range: string
  creation_time:
    name: creation_time
    description: 'An ISO 8601 -- RFC 3339 (subset)-compliant timestamp documenting
      this collection''s creation time: YYYY-MM-DDTHH:MM:SS±NN:NN'
    from_schema: https://w3id.org/linkml/cfde
    alias: creation_time
    owner: collection
    range: datetime
  abbreviation:
    name: abbreviation
    description: A very short display label for this collection
    from_schema: https://w3id.org/linkml/cfde
    alias: abbreviation
    owner: collection
    range: string
    pattern: ^[a-zA-Z0-9_]+$
  description:
    name: description
    description: A human-readable description of this collection
    from_schema: https://w3id.org/linkml/cfde
    alias: description
    owner: collection
    range: string
  has_time_series_data:
    name: has_time_series_data
    description: 'Does this collection contain time-series data? (allowed values:
      [true|false|null] -- true == yes, contains time-series data; false == no, doesn''t
      contain time-series data; null == no info provided)'
    from_schema: https://w3id.org/linkml/cfde
    alias: has_time_series_data
    owner: collection
    range: boolean
unique_keys:
  name_unique_key:
    unique_key_name: name_unique_key
    unique_key_slots:
    - name
  collection_primary_key:
    unique_key_name: collection_primary_key
    unique_key_slots:
    - '[''id_namespace'', ''local_id'']'