Class: Gene

List of Ensembl genes directly referenced in this C2M2 submission

classDiagram class Gene Gene : description Gene : id Gene : organism Gene : synonyms

Slots

Name	Range	Cardinality	Description	Info
id	xsd:string	1..1	An Ensembl gene ID (e.g. 'ENSG00000012048')	.
description	xsd:string	0..1	The Ensembl 'Description' of this gene (e.g. 'BRCA1 DNA repair associated')	.
synonyms	xsd:string	0..*	A list of Ensembl 'Gene synonyms' for this gene (e.g. ['BRCC1', 'FANCS', 'PPP1R53', 'RNF53'])	.
organism	NcbiTaxonomy	1..1	An NCBI Taxonomy Database ID identifying this gene's source organism (e.g. 'NCBI:txid9606')	.

Usages

used by	used in	type	used
CollectionGene	Gene	range	gene
BiosampleGene	Gene	range	gene
PhenotypeGene	Gene	range	gene
ProteinGene	Gene	range	gene

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/cfde

Mappings

Mapping Type	Mapped Value
self	['cfde_schema:Gene']
native	['cfde_schema:Gene']

LinkML Specification

Direct

name: gene
description: List of Ensembl genes directly referenced in this C2M2 submission
title: gene
from_schema: https://w3id.org/linkml/cfde
attributes:
  id:
    name: id
    description: An Ensembl gene ID (e.g. 'ENSG00000012048')
    from_schema: https://w3id.org/linkml/cfde
    identifier: true
    range: string
    required: true
  description:
    name: description
    description: The Ensembl 'Description' of this gene (e.g. 'BRCA1 DNA repair associated')
    from_schema: https://w3id.org/linkml/cfde
    range: string
  synonyms:
    name: synonyms
    description: A list of Ensembl 'Gene synonyms' for this gene (e.g. ['BRCC1', 'FANCS',
      'PPP1R53', 'RNF53'])
    from_schema: https://w3id.org/linkml/cfde
    multivalued: true
  organism:
    name: organism
    description: An NCBI Taxonomy Database ID identifying this gene's source organism
      (e.g. 'NCBI:txid9606')
    from_schema: https://w3id.org/linkml/cfde
    range: ncbi_taxonomy
    required: true
    pattern: ^NCBI:txid[0-9]+$
unique_keys:
  id_unique_key:
    unique_key_name: id_unique_key
    unique_key_slots:
    - id

Induced

name: gene
description: List of Ensembl genes directly referenced in this C2M2 submission
title: gene
from_schema: https://w3id.org/linkml/cfde
attributes:
  id:
    name: id
    description: An Ensembl gene ID (e.g. 'ENSG00000012048')
    from_schema: https://w3id.org/linkml/cfde
    identifier: true
    alias: id
    owner: gene
    range: string
    required: true
  description:
    name: description
    description: The Ensembl 'Description' of this gene (e.g. 'BRCA1 DNA repair associated')
    from_schema: https://w3id.org/linkml/cfde
    alias: description
    owner: gene
    range: string
  synonyms:
    name: synonyms
    description: A list of Ensembl 'Gene synonyms' for this gene (e.g. ['BRCC1', 'FANCS',
      'PPP1R53', 'RNF53'])
    from_schema: https://w3id.org/linkml/cfde
    multivalued: true
    alias: synonyms
    owner: gene
    range: string
  organism:
    name: organism
    description: An NCBI Taxonomy Database ID identifying this gene's source organism
      (e.g. 'NCBI:txid9606')
    from_schema: https://w3id.org/linkml/cfde
    alias: organism
    owner: gene
    range: ncbi_taxonomy
    required: true
    pattern: ^NCBI:txid[0-9]+$
unique_keys:
  id_unique_key:
    unique_key_name: id_unique_key
    unique_key_slots:
    - id