Class: NcbiTaxonomy

List of NCBI Taxonomy Database IDs identifying taxa used to describe C2M2 subjects

classDiagram class NcbiTaxonomy NcbiTaxonomy : clade NcbiTaxonomy : description NcbiTaxonomy : id NcbiTaxonomy : synonyms

Slots

Name	Range	Cardinality	Description	Info
id	xsd:string	1..1	An NCBI Taxonomy Database ID identifying a particular taxon	.
clade	xsd:string	1..1	The phylogenetic level (e.g. species, genus) assigned to this taxon	.
description	xsd:string	0..1	A human-readable description of this taxon	.
synonyms	xsd:string	0..*	A list of synonyms for this taxon as identified by the NCBI Taxonomy DB	.

Usages

used by	used in	type	used
CollectionTaxonomy	taxon	range	ncbi_taxonomy
SubjectRoleTaxonomy	taxonomy_id	range	ncbi_taxonomy
Gene	organism	range	ncbi_taxonomy
Protein	organism	range	ncbi_taxonomy

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/cfde

Mappings

Mapping Type	Mapped Value
self	['cfde_schema:NcbiTaxonomy']
native	['cfde_schema:NcbiTaxonomy']

LinkML Specification

Direct

name: ncbi_taxonomy
description: List of NCBI Taxonomy Database IDs identifying taxa used to describe
  C2M2 subjects
title: ncbi_taxonomy
from_schema: https://w3id.org/linkml/cfde
attributes:
  id:
    name: id
    description: An NCBI Taxonomy Database ID identifying a particular taxon
    from_schema: https://w3id.org/linkml/cfde
    identifier: true
    range: string
    required: true
    pattern: ^NCBI:txid[0-9]+$
  clade:
    name: clade
    description: The phylogenetic level (e.g. species, genus) assigned to this taxon
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  description:
    name: description
    description: A human-readable description of this taxon
    from_schema: https://w3id.org/linkml/cfde
    range: string
  synonyms:
    name: synonyms
    description: A list of synonyms for this taxon as identified by the NCBI Taxonomy
      DB
    from_schema: https://w3id.org/linkml/cfde
    multivalued: true
unique_keys:
  id_unique_key:
    unique_key_name: id_unique_key
    unique_key_slots:
    - id

Induced

name: ncbi_taxonomy
description: List of NCBI Taxonomy Database IDs identifying taxa used to describe
  C2M2 subjects
title: ncbi_taxonomy
from_schema: https://w3id.org/linkml/cfde
attributes:
  id:
    name: id
    description: An NCBI Taxonomy Database ID identifying a particular taxon
    from_schema: https://w3id.org/linkml/cfde
    identifier: true
    alias: id
    owner: ncbi_taxonomy
    range: string
    required: true
    pattern: ^NCBI:txid[0-9]+$
  clade:
    name: clade
    description: The phylogenetic level (e.g. species, genus) assigned to this taxon
    from_schema: https://w3id.org/linkml/cfde
    alias: clade
    owner: ncbi_taxonomy
    range: string
    required: true
  description:
    name: description
    description: A human-readable description of this taxon
    from_schema: https://w3id.org/linkml/cfde
    alias: description
    owner: ncbi_taxonomy
    range: string
  synonyms:
    name: synonyms
    description: A list of synonyms for this taxon as identified by the NCBI Taxonomy
      DB
    from_schema: https://w3id.org/linkml/cfde
    multivalued: true
    alias: synonyms
    owner: ncbi_taxonomy
    range: string
unique_keys:
  id_unique_key:
    unique_key_name: id_unique_key
    unique_key_slots:
    - id