Class: SubjectPhenotype
Association between a C2M2 subject and a phenotype positively OR negatively clinically identified for that subject
URI: cfde_schema:SubjectPhenotype
classDiagram
class SubjectPhenotype
SubjectPhenotype : association_type
SubjectPhenotype : phenotype
SubjectPhenotype : subject_id_namespace
SubjectPhenotype : subject_local_id
Slots
Name | Range | Cardinality | Description | Info |
---|---|---|---|---|
subject_id_namespace | xsd:string | 1..1 | Identifier namespace for this subject | . |
subject_local_id | xsd:string | 1..1 | The ID of this subject | . |
association_type | AssociationTypeEnum | 1..1 | The relationship between this subject and this phenotype (e.g. 'observed' or '(tested for, but) not observed') | . |
phenotype | Phenotype | 1..1 | A Human Phenotype Ontology CV term ID describing this phenotype | . |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/linkml/cfde
Mappings
Mapping Type | Mapped Value |
---|---|
self | ['cfde_schema:SubjectPhenotype'] |
native | ['cfde_schema:SubjectPhenotype'] |
LinkML Specification
Direct
name: subject_phenotype
description: Association between a C2M2 subject and a phenotype positively OR negatively
clinically identified for that subject
title: subject_phenotype
from_schema: https://w3id.org/linkml/cfde
attributes:
subject_id_namespace:
name: subject_id_namespace
description: Identifier namespace for this subject
from_schema: https://w3id.org/linkml/cfde
range: string
required: true
subject_local_id:
name: subject_local_id
description: The ID of this subject
from_schema: https://w3id.org/linkml/cfde
range: string
required: true
association_type:
name: association_type
description: The relationship between this subject and this phenotype (e.g. 'observed'
or '(tested for, but) not observed')
from_schema: https://w3id.org/linkml/cfde
range: AssociationTypeEnum
required: true
phenotype:
name: phenotype
description: A Human Phenotype Ontology CV term ID describing this phenotype
from_schema: https://w3id.org/linkml/cfde
range: phenotype
required: true
unique_keys:
subject_phenotype_primary_key:
unique_key_name: subject_phenotype_primary_key
unique_key_slots:
- '[''subject_id_namespace'', ''subject_local_id'', ''association_type'', ''phenotype'']'
Induced
name: subject_phenotype
description: Association between a C2M2 subject and a phenotype positively OR negatively
clinically identified for that subject
title: subject_phenotype
from_schema: https://w3id.org/linkml/cfde
attributes:
subject_id_namespace:
name: subject_id_namespace
description: Identifier namespace for this subject
from_schema: https://w3id.org/linkml/cfde
alias: subject_id_namespace
owner: subject_phenotype
range: string
required: true
subject_local_id:
name: subject_local_id
description: The ID of this subject
from_schema: https://w3id.org/linkml/cfde
alias: subject_local_id
owner: subject_phenotype
range: string
required: true
association_type:
name: association_type
description: The relationship between this subject and this phenotype (e.g. 'observed'
or '(tested for, but) not observed')
from_schema: https://w3id.org/linkml/cfde
alias: association_type
owner: subject_phenotype
range: AssociationTypeEnum
required: true
phenotype:
name: phenotype
description: A Human Phenotype Ontology CV term ID describing this phenotype
from_schema: https://w3id.org/linkml/cfde
alias: phenotype
owner: subject_phenotype
range: phenotype
required: true
unique_keys:
subject_phenotype_primary_key:
unique_key_name: subject_phenotype_primary_key
unique_key_slots:
- '[''subject_id_namespace'', ''subject_local_id'', ''association_type'', ''phenotype'']'