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Class: SubjectPhenotype

Association between a C2M2 subject and a phenotype positively OR negatively clinically identified for that subject

URI: cfde_schema:SubjectPhenotype

classDiagram class SubjectPhenotype SubjectPhenotype : association_type SubjectPhenotype : phenotype SubjectPhenotype : subject_id_namespace SubjectPhenotype : subject_local_id

Slots

Name Range Cardinality Description Info
subject_id_namespace xsd:string 1..1 Identifier namespace for this subject .
subject_local_id xsd:string 1..1 The ID of this subject .
association_type AssociationTypeEnum 1..1 The relationship between this subject and this phenotype (e.g. 'observed' or '(tested for, but) not observed') .
phenotype Phenotype 1..1 A Human Phenotype Ontology CV term ID describing this phenotype .

Usages

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/cfde

Mappings

Mapping Type Mapped Value
self ['cfde_schema:SubjectPhenotype']
native ['cfde_schema:SubjectPhenotype']

LinkML Specification

Direct

name: subject_phenotype
description: Association between a C2M2 subject and a phenotype positively OR negatively
  clinically identified for that subject
title: subject_phenotype
from_schema: https://w3id.org/linkml/cfde
attributes:
  subject_id_namespace:
    name: subject_id_namespace
    description: Identifier namespace for this subject
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  subject_local_id:
    name: subject_local_id
    description: The ID of this subject
    from_schema: https://w3id.org/linkml/cfde
    range: string
    required: true
  association_type:
    name: association_type
    description: The relationship between this subject and this phenotype (e.g. 'observed'
      or '(tested for, but) not observed')
    from_schema: https://w3id.org/linkml/cfde
    range: AssociationTypeEnum
    required: true
  phenotype:
    name: phenotype
    description: A Human Phenotype Ontology CV term ID describing this phenotype
    from_schema: https://w3id.org/linkml/cfde
    range: phenotype
    required: true
unique_keys:
  subject_phenotype_primary_key:
    unique_key_name: subject_phenotype_primary_key
    unique_key_slots:
    - '[''subject_id_namespace'', ''subject_local_id'', ''association_type'', ''phenotype'']'

Induced

name: subject_phenotype
description: Association between a C2M2 subject and a phenotype positively OR negatively
  clinically identified for that subject
title: subject_phenotype
from_schema: https://w3id.org/linkml/cfde
attributes:
  subject_id_namespace:
    name: subject_id_namespace
    description: Identifier namespace for this subject
    from_schema: https://w3id.org/linkml/cfde
    alias: subject_id_namespace
    owner: subject_phenotype
    range: string
    required: true
  subject_local_id:
    name: subject_local_id
    description: The ID of this subject
    from_schema: https://w3id.org/linkml/cfde
    alias: subject_local_id
    owner: subject_phenotype
    range: string
    required: true
  association_type:
    name: association_type
    description: The relationship between this subject and this phenotype (e.g. 'observed'
      or '(tested for, but) not observed')
    from_schema: https://w3id.org/linkml/cfde
    alias: association_type
    owner: subject_phenotype
    range: AssociationTypeEnum
    required: true
  phenotype:
    name: phenotype
    description: A Human Phenotype Ontology CV term ID describing this phenotype
    from_schema: https://w3id.org/linkml/cfde
    alias: phenotype
    owner: subject_phenotype
    range: phenotype
    required: true
unique_keys:
  subject_phenotype_primary_key:
    unique_key_name: subject_phenotype_primary_key
    unique_key_slots:
    - '[''subject_id_namespace'', ''subject_local_id'', ''association_type'', ''phenotype'']'