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Class: ChromosomeLocation

URI: phenopackets:ChromosomeLocation

erDiagram ChromosomeLocation { string chr string id string speciesId } CytobandInterval { string end string start } ChromosomeLocation ||--|o CytobandInterval : "interval"

Slots

Name Cardinality and Range Description Inheritance
chr 0..1
String		 direct
id 0..1
String		 direct
interval 0..1
CytobandInterval		 direct
speciesId 0..1
String		 direct

Usages

used by used in type used
Allele chromosomeLocation range ChromosomeLocation
Location chromosomeLocation range ChromosomeLocation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type Mapped Value
self phenopackets:ChromosomeLocation
native phenopackets:ChromosomeLocation

LinkML Source

Direct

name: ChromosomeLocation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  chr:
    name: chr
    annotations:
      rank:
        tag: rank
        value: 3
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - ChromosomeLocation
    range: string
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  interval:
    name: interval
    annotations:
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - TimeElement
    - ChromosomeLocation
    - DoseInterval
    range: CytobandInterval
    inlined: true
    inlined_as_list: true
  speciesId:
    name: speciesId
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - ChromosomeLocation
    range: string

Induced

name: ChromosomeLocation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  chr:
    name: chr
    annotations:
      rank:
        tag: rank
        value: 3
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: chr
    owner: ChromosomeLocation
    domain_of:
    - ChromosomeLocation
    range: string
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: id
    owner: ChromosomeLocation
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  interval:
    name: interval
    annotations:
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: interval
    owner: ChromosomeLocation
    domain_of:
    - TimeElement
    - ChromosomeLocation
    - DoseInterval
    range: CytobandInterval
    inlined: true
    inlined_as_list: true
  speciesId:
    name: speciesId
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: speciesId
    owner: ChromosomeLocation
    domain_of:
    - ChromosomeLocation
    range: string