Class: File

URI: phenopackets:File

erDiagram File { string uri } Dictionary { } File ||--|o Dictionary : "fileAttributes" File ||--|o Dictionary : "individualToFileIdentifiers"

Slots

Name	Cardinality and Range	Description	Inheritance
fileAttributes	0..1 Dictionary	Map of attributes describing the file	direct
individualToFileIdentifiers	0..1 Dictionary	A map of identifiers mapping an individual to a sample in the file	direct
uri	0..1 String	URI for the file e	direct

Usages

used by	used in	type	used
Cohort	files	range	File
Family	files	range	File
Phenopacket	files	range	File
Biosample	files	range	File

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type	Mapped Value
self	phenopackets:File
native	phenopackets:File

LinkML Source

Direct

name: File
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  fileAttributes:
    name: fileAttributes
    annotations:
      rank:
        tag: rank
        value: 3
    description: Map of attributes describing the file. For example the File format
      or genome assembly would be defied here. For genomic data files there MUST be
      a 'genomeAssembly' key.
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - File
    range: Dictionary
    inlined: true
    inlined_as_list: true
  individualToFileIdentifiers:
    name: individualToFileIdentifiers
    annotations:
      rank:
        tag: rank
        value: 2
    description: A map of identifiers mapping an individual to a sample in the file.
      The key values must correspond to the Individual::id for the individuals in
      the message, the values must map to the samples in the file.
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - File
    range: Dictionary
    inlined: true
    inlined_as_list: true
  uri:
    name: uri
    annotations:
      rank:
        tag: rank
        value: 1
    description: URI for the file e.g. file://data/genomes/file1.vcf.gz or https://opensnp.org/data/60.23andme-exome-vcf.231?1341012444
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - File
    range: string

Induced

name: File
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  fileAttributes:
    name: fileAttributes
    annotations:
      rank:
        tag: rank
        value: 3
    description: Map of attributes describing the file. For example the File format
      or genome assembly would be defied here. For genomic data files there MUST be
      a 'genomeAssembly' key.
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: fileAttributes
    owner: File
    domain_of:
    - File
    range: Dictionary
    inlined: true
    inlined_as_list: true
  individualToFileIdentifiers:
    name: individualToFileIdentifiers
    annotations:
      rank:
        tag: rank
        value: 2
    description: A map of identifiers mapping an individual to a sample in the file.
      The key values must correspond to the Individual::id for the individuals in
      the message, the values must map to the samples in the file.
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: individualToFileIdentifiers
    owner: File
    domain_of:
    - File
    range: Dictionary
    inlined: true
    inlined_as_list: true
  uri:
    name: uri
    annotations:
      rank:
        tag: rank
        value: 1
    description: URI for the file e.g. file://data/genomes/file1.vcf.gz or https://opensnp.org/data/60.23andme-exome-vcf.231?1341012444
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: uri
    owner: File
    domain_of:
    - File
    range: string