Class: Interpretation

URI: phenopackets:Interpretation

erDiagram Interpretation { string id ProgressStatus progressStatus string summary } Diagnosis { } GenomicInterpretation { InterpretationStatus interpretationStatus string subjectOrBiosampleId } OntologyClass { string id string label } Interpretation ||--|o Diagnosis : "diagnosis" Diagnosis ||--|o OntologyClass : "disease" Diagnosis ||--}o GenomicInterpretation : "genomicInterpretations" GenomicInterpretation ||--|o GeneDescriptor : "gene" GenomicInterpretation ||--|o VariantInterpretation : "variantInterpretation"

Slots

Name	Cardinality and Range	Description	Inheritance
diagnosis	0..1 Diagnosis	The diagnosis made in this interpretation	direct
id	0..1 String	id of the interpretation	direct
progressStatus	0..1 ProgressStatus		direct
summary	0..1 String		direct

Usages

used by	used in	type	used
Phenopacket	interpretations	range	Interpretation

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type	Mapped Value
self	phenopackets:Interpretation
native	phenopackets:Interpretation

LinkML Source

Direct

name: Interpretation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  diagnosis:
    name: diagnosis
    annotations:
      rank:
        tag: rank
        value: 3
    description: The diagnosis made in this interpretation
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Interpretation
    range: Diagnosis
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: id of the interpretation
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  progressStatus:
    name: progressStatus
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Interpretation
    range: ProgressStatus
  summary:
    name: summary
    annotations:
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Interpretation
    range: string

Induced

name: Interpretation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  diagnosis:
    name: diagnosis
    annotations:
      rank:
        tag: rank
        value: 3
    description: The diagnosis made in this interpretation
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: diagnosis
    owner: Interpretation
    domain_of:
    - Interpretation
    range: Diagnosis
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: id of the interpretation
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: id
    owner: Interpretation
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  progressStatus:
    name: progressStatus
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: progressStatus
    owner: Interpretation
    domain_of:
    - Interpretation
    range: ProgressStatus
  summary:
    name: summary
    annotations:
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: summary
    owner: Interpretation
    domain_of:
    - Interpretation
    range: string