Class: OntologyClass

A class (aka term, concept) in an ontology. FHIR mapping: CodeableConcept (http://www.hl7.org/fhir/datatypes.html#CodeableConcept) see also Coding (http://www.hl7.org/fhir/datatypes.html#Coding)

URI: phenopackets:OntologyClass

erDiagram OntologyClass { string id string label }

Slots

Name	Cardinality and Range	Description	Inheritance
id	1..1 String	a CURIE-style identifier e	direct
label	0..1 String	class label, aka name	direct

Usages

used by	used in	type	used
Evidence	evidenceCode	range	OntologyClass
Procedure	bodySite	range	OntologyClass
Procedure	code	range	OntologyClass
TimeElement	ontologyClass	range	OntologyClass
Measurement	assay	range	OntologyClass
Quantity	unit	range	OntologyClass
ReferenceRange	unit	range	OntologyClass
TypedQuantity	type	range	OntologyClass
Value	ontologyClass	range	OntologyClass
PhenotypicFeature	modifiers	range	OntologyClass
PhenotypicFeature	severity	range	OntologyClass
PhenotypicFeature	type	range	OntologyClass
Biosample	diagnosticMarkers	range	OntologyClass
Biosample	histologicalDiagnosis	range	OntologyClass
Biosample	materialSample	range	OntologyClass
Biosample	pathologicalStage	range	OntologyClass
Biosample	pathologicalTnmFinding	range	OntologyClass
Biosample	sampleProcessing	range	OntologyClass
Biosample	sampleStorage	range	OntologyClass
Biosample	sampleType	range	OntologyClass
Biosample	sampledTissue	range	OntologyClass
Biosample	taxonomy	range	OntologyClass
Biosample	tumorGrade	range	OntologyClass
Biosample	tumorProgression	range	OntologyClass
Disease	clinicalTnmFinding	range	OntologyClass
Disease	diseaseStage	range	OntologyClass
Disease	laterality	range	OntologyClass
Disease	primarySite	range	OntologyClass
Disease	term	range	OntologyClass
VariationDescriptor	allelicState	range	OntologyClass
VariationDescriptor	structuralType	range	OntologyClass
Diagnosis	disease	range	OntologyClass
Individual	gender	range	OntologyClass
Individual	taxonomy	range	OntologyClass
VitalStatus	causeOfDeath	range	OntologyClass
DoseInterval	scheduleFrequency	range	OntologyClass
MedicalAction	adverseEvents	range	OntologyClass
MedicalAction	responseToTreatment	range	OntologyClass
MedicalAction	treatmentIntent	range	OntologyClass
MedicalAction	treatmentTarget	range	OntologyClass
MedicalAction	treatmentTerminationReason	range	OntologyClass
RadiationTherapy	bodySite	range	OntologyClass
RadiationTherapy	modality	range	OntologyClass
TherapeuticRegimen	ontologyClass	range	OntologyClass
Treatment	agent	range	OntologyClass
Treatment	routeOfAdministration	range	OntologyClass

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type	Mapped Value
self	phenopackets:OntologyClass
native	phenopackets:OntologyClass

LinkML Source

Direct

name: OntologyClass
description: 'A class (aka term, concept) in an ontology. FHIR mapping: CodeableConcept
  (http://www.hl7.org/fhir/datatypes.html#CodeableConcept) see also Coding (http://www.hl7.org/fhir/datatypes.html#Coding)'
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  id:
    name: id
    annotations:
      rank:
        tag: rank
        value: 1
    description: a CURIE-style identifier e.g. HP:0100024, MP:0001284, UBERON:0001690.
      This is the primary key for the ontology class REQUIRED!
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    identifier: true
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
    required: true
  label:
    name: label
    annotations:
      rank:
        tag: rank
        value: 2
    description: class label, aka name. E.g. "Abnormality of cardiovascular system"
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - OntologyClass
    - VariationDescriptor
    range: string

Induced

name: OntologyClass
description: 'A class (aka term, concept) in an ontology. FHIR mapping: CodeableConcept
  (http://www.hl7.org/fhir/datatypes.html#CodeableConcept) see also Coding (http://www.hl7.org/fhir/datatypes.html#Coding)'
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  id:
    name: id
    annotations:
      rank:
        tag: rank
        value: 1
    description: a CURIE-style identifier e.g. HP:0100024, MP:0001284, UBERON:0001690.
      This is the primary key for the ontology class REQUIRED!
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    identifier: true
    alias: id
    owner: OntologyClass
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
    required: true
  label:
    name: label
    annotations:
      rank:
        tag: rank
        value: 2
    description: class label, aka name. E.g. "Abnormality of cardiovascular system"
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: label
    owner: OntologyClass
    domain_of:
    - OntologyClass
    - VariationDescriptor
    range: string