Class: Resource

Description of an external resource used for referencing an object. For example the resource may be an ontology such as the HPO or SNOMED. FHIR mapping: CodeSystem (http://www.hl7.org/fhir/codesystem.html)

URI: phenopackets:Resource

erDiagram Resource { string id string iriPrefix string name string namespacePrefix string url string version }

Slots

Name	Cardinality and Range	Description	Inheritance
id	0..1 String	for OBO Ontologies, the value of this string MUST always be the official OBO ...	direct
iriPrefix	0..1 String	Full IRI prefix which can be used with the namespace_prefix and the OntologyC...	direct
name	0..1 String	e	direct
namespacePrefix	0..1 String	The prefix used in the CURIE of an OntologyClass e	direct
url	0..1 String	For OBO ontologies, this should always be the PURL, e	direct
version	0..1 String	for OBO ontologies, this should be the versionIRI	direct

Usages

used by	used in	type	used
MetaData	resources	range	Resource

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type	Mapped Value
self	phenopackets:Resource
native	phenopackets:Resource

LinkML Source

Direct

name: Resource
description: 'Description of an external resource used for referencing an object.
  For example the resource may be an ontology such as the HPO or SNOMED. FHIR mapping:
  CodeSystem (http://www.hl7.org/fhir/codesystem.html)'
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: 'for OBO Ontologies, the value of this string MUST always be the
      official OBO ID, which is always equivalent to the ID prefix in lower case.
      Examples: hp, go, mp, mondo Consult http://obofoundry.org for a complete list
      For other ontologies (e.g. SNOMED), use the prefix in identifiers.org'
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  iriPrefix:
    name: iriPrefix
    annotations:
      rank:
        tag: rank
        value: 6
    description: 'Full IRI prefix which can be used with the namespace_prefix and
      the OntologyClass::id to resolve to an IRI for a term. Tools such as the curie-util
      (https://github.com/prefixcommons/curie-util) can utilise this to produce fully-resolvable
      IRIs for an OntologyClass. e.g. Using the HPO term encoding the concept of ''Severe''
      OntologyClass: id: ''HP:0012828'' label: ''Severe'' Resource: namespace_prefix:
      ''HP'' iri_prefix: ''http://purl.obolibrary.org/obo/HP_'' the term can be resolved
      to http://purl.obolibrary.org/obo/HP_0012828'
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Resource
    range: string
  name:
    name: name
    annotations:
      rank:
        tag: rank
        value: 2
    description: e.g. The Human Phenotype Ontology for OBO Ontologies, the value of
      this string SHOULD be the same as the title field on http://obofoundry.org however,
      this field is purely for information purposes and software should not encode
      any assumptions
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Extension
    - Resource
    range: string
  namespacePrefix:
    name: namespacePrefix
    annotations:
      rank:
        tag: rank
        value: 5
    description: The prefix used in the CURIE of an OntologyClass e.g. HP, MP, ECO
      For example an HPO term will have a CURIE like this - HP:0012828 which should
      be used in combination with the iri_prefix to form a fully-resolvable IRI
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Resource
    range: string
  url:
    name: url
    annotations:
      rank:
        tag: rank
        value: 3
    description: For OBO ontologies, this should always be the PURL, e.g. http://purl.obolibrary.org/obo/hp.owl,
      http://purl.obolibrary.org/obo/hp.obo
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - Resource
    range: string
  version:
    name: version
    annotations:
      rank:
        tag: rank
        value: 4
    description: for OBO ontologies, this should be the versionIRI
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Expression
    - Resource
    range: string

Induced

name: Resource
description: 'Description of an external resource used for referencing an object.
  For example the resource may be an ontology such as the HPO or SNOMED. FHIR mapping:
  CodeSystem (http://www.hl7.org/fhir/codesystem.html)'
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 1
    description: 'for OBO Ontologies, the value of this string MUST always be the
      official OBO ID, which is always equivalent to the ID prefix in lower case.
      Examples: hp, go, mp, mondo Consult http://obofoundry.org for a complete list
      For other ontologies (e.g. SNOMED), use the prefix in identifiers.org'
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: id
    owner: Resource
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  iriPrefix:
    name: iriPrefix
    annotations:
      rank:
        tag: rank
        value: 6
    description: 'Full IRI prefix which can be used with the namespace_prefix and
      the OntologyClass::id to resolve to an IRI for a term. Tools such as the curie-util
      (https://github.com/prefixcommons/curie-util) can utilise this to produce fully-resolvable
      IRIs for an OntologyClass. e.g. Using the HPO term encoding the concept of ''Severe''
      OntologyClass: id: ''HP:0012828'' label: ''Severe'' Resource: namespace_prefix:
      ''HP'' iri_prefix: ''http://purl.obolibrary.org/obo/HP_'' the term can be resolved
      to http://purl.obolibrary.org/obo/HP_0012828'
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: iriPrefix
    owner: Resource
    domain_of:
    - Resource
    range: string
  name:
    name: name
    annotations:
      rank:
        tag: rank
        value: 2
    description: e.g. The Human Phenotype Ontology for OBO Ontologies, the value of
      this string SHOULD be the same as the title field on http://obofoundry.org however,
      this field is purely for information purposes and software should not encode
      any assumptions
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: name
    owner: Resource
    domain_of:
    - Extension
    - Resource
    range: string
  namespacePrefix:
    name: namespacePrefix
    annotations:
      rank:
        tag: rank
        value: 5
    description: The prefix used in the CURIE of an OntologyClass e.g. HP, MP, ECO
      For example an HPO term will have a CURIE like this - HP:0012828 which should
      be used in combination with the iri_prefix to form a fully-resolvable IRI
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: namespacePrefix
    owner: Resource
    domain_of:
    - Resource
    range: string
  url:
    name: url
    annotations:
      rank:
        tag: rank
        value: 3
    description: For OBO ontologies, this should always be the PURL, e.g. http://purl.obolibrary.org/obo/hp.owl,
      http://purl.obolibrary.org/obo/hp.obo
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: url
    owner: Resource
    domain_of:
    - Resource
    range: string
  version:
    name: version
    annotations:
      rank:
        tag: rank
        value: 4
    description: for OBO ontologies, this should be the versionIRI
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: version
    owner: Resource
    domain_of:
    - Expression
    - Resource
    range: string