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Class: SystemicVariation

URI: phenopackets:SystemicVariation

erDiagram SystemicVariation { } CopyNumber { string curie string id } RepeatedSequenceExpression { } Number { integer value } LiteralSequenceExpression { string sequence } IndefiniteRange { string comparator integer value } Haplotype { } Gene { string geneId } DerivedSequenceExpression { boolean reverseComplement } DefiniteRange { integer max integer min } Allele { string curie string id } SystemicVariation ||--|o CopyNumber : "copyNumber" CopyNumber ||--|o Allele : "allele" CopyNumber ||--|o DefiniteRange : "definiteRange" CopyNumber ||--|o DerivedSequenceExpression : "derivedSequenceExpression" CopyNumber ||--|o Gene : "gene" CopyNumber ||--|o Haplotype : "haplotype" CopyNumber ||--|o IndefiniteRange : "indefiniteRange" CopyNumber ||--|o LiteralSequenceExpression : "literalSequenceExpression" CopyNumber ||--|o Number : "number" CopyNumber ||--|o RepeatedSequenceExpression : "repeatedSequenceExpression" RepeatedSequenceExpression ||--|o DefiniteRange : "definiteRange" RepeatedSequenceExpression ||--|o DerivedSequenceExpression : "derivedSequenceExpression" RepeatedSequenceExpression ||--|o IndefiniteRange : "indefiniteRange" RepeatedSequenceExpression ||--|o LiteralSequenceExpression : "literalSequenceExpression" RepeatedSequenceExpression ||--|o Number : "number" DerivedSequenceExpression ||--|o SequenceLocation : "location" Allele ||--|o ChromosomeLocation : "chromosomeLocation" Allele ||--|o DerivedSequenceExpression : "derivedSequenceExpression" Allele ||--|o LiteralSequenceExpression : "literalSequenceExpression" Allele ||--|o RepeatedSequenceExpression : "repeatedSequenceExpression" Allele ||--|o SequenceLocation : "sequenceLocation"

Slots

Name Cardinality and Range Description Inheritance
copyNumber 0..1
CopyNumber		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type Mapped Value
self phenopackets:SystemicVariation
native phenopackets:SystemicVariation

LinkML Source

Direct

name: SystemicVariation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  copyNumber:
    name: copyNumber
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Abundance
    - Member
    - SystemicVariation
    - Variation
    range: CopyNumber
rules:
- postconditions:
    exactly_one_of:
    - slot_conditions:
        copyNumber:
          name: copyNumber
          required: true

Induced

name: SystemicVariation
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  copyNumber:
    name: copyNumber
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: copyNumber
    owner: SystemicVariation
    domain_of:
    - Abundance
    - Member
    - SystemicVariation
    - Variation
    range: CopyNumber
rules:
- postconditions:
    exactly_one_of:
    - slot_conditions:
        copyNumber:
          name: copyNumber
          required: true