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Class: VcfRecord

URI: phenopackets:VcfRecord

erDiagram VcfRecord { string alt string chrom string filter string genomeAssembly string id string info integer pos string qual string ref }

Slots

Name Cardinality and Range Description Inheritance
alt 0..1
String		 direct
chrom 0..1
String		 direct
filter 0..1
String		 direct
genomeAssembly 0..1
String		 direct
id 0..1
String		 direct
info 0..1
String		 direct
pos 0..1
Integer		 direct
qual 0..1
String		 direct
ref 0..1
String		 direct

Usages

used by used in type used
VariationDescriptor vcfRecord range VcfRecord

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type Mapped Value
self phenopackets:VcfRecord
native phenopackets:VcfRecord

LinkML Source

Direct

name: VcfRecord
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  alt:
    name: alt
    annotations:
      rank:
        tag: rank
        value: 6
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  chrom:
    name: chrom
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  filter:
    name: filter
    annotations:
      rank:
        tag: rank
        value: 8
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  genomeAssembly:
    name: genomeAssembly
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  info:
    name: info
    annotations:
      rank:
        tag: rank
        value: 9
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  pos:
    name: pos
    annotations:
      rank:
        tag: rank
        value: 3
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: integer
  qual:
    name: qual
    annotations:
      rank:
        tag: rank
        value: 7
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string
  ref:
    name: ref
    annotations:
      rank:
        tag: rank
        value: 5
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VcfRecord
    range: string

Induced

name: VcfRecord
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  alt:
    name: alt
    annotations:
      rank:
        tag: rank
        value: 6
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: alt
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  chrom:
    name: chrom
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: chrom
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  filter:
    name: filter
    annotations:
      rank:
        tag: rank
        value: 8
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: filter
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  genomeAssembly:
    name: genomeAssembly
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: genomeAssembly
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  id:
    name: id
    annotations:
      percent_encoded:
        tag: percent_encoded
        value: true
      rank:
        tag: rank
        value: 4
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    alias: id
    owner: VcfRecord
    domain_of:
    - Cohort
    - Family
    - Phenopacket
    - ExternalReference
    - OntologyClass
    - Biosample
    - Allele
    - ChromosomeLocation
    - CopyNumber
    - Member
    - SequenceLocation
    - Text
    - VariationDescriptor
    - VcfRecord
    - Interpretation
    - Individual
    - Resource
    range: string
  info:
    name: info
    annotations:
      rank:
        tag: rank
        value: 9
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: info
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  pos:
    name: pos
    annotations:
      rank:
        tag: rank
        value: 3
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: pos
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: integer
  qual:
    name: qual
    annotations:
      rank:
        tag: rank
        value: 7
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: qual
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string
  ref:
    name: ref
    annotations:
      rank:
        tag: rank
        value: 5
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: ref
    owner: VcfRecord
    domain_of:
    - VcfRecord
    range: string