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Class: VitalStatus

URI: phenopackets:VitalStatus

erDiagram VitalStatus { Status status integer survivalTimeInDays } TimeElement { string timestamp } OntologyClass { string id string label } TimeInterval { string end string start } GestationalAge { integer days integer weeks } AgeRange { } Age { string iso8601duration } VitalStatus ||--|o OntologyClass : "causeOfDeath" VitalStatus ||--|o TimeElement : "timeOfDeath" TimeElement ||--|o Age : "age" TimeElement ||--|o AgeRange : "ageRange" TimeElement ||--|o GestationalAge : "gestationalAge" TimeElement ||--|o TimeInterval : "interval" TimeElement ||--|o OntologyClass : "ontologyClass" AgeRange ||--|o Age : "end" AgeRange ||--|o Age : "start"

Slots

Name Cardinality and Range Description Inheritance
causeOfDeath 0..1
OntologyClass		 ARGO mapping donor::cause_of_death direct
status 0..1
Status		 direct
survivalTimeInDays 0..1
Integer		 ARGO mapping donor::survival_time direct
timeOfDeath 0..1
TimeElement		 direct

Usages

used by used in type used
Individual vitalStatus range VitalStatus

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/linkml/phenopackets/phenopackets

Mappings

Mapping Type Mapped Value
self phenopackets:VitalStatus
native phenopackets:VitalStatus

LinkML Source

Direct

name: VitalStatus
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  causeOfDeath:
    name: causeOfDeath
    annotations:
      rank:
        tag: rank
        value: 3
    description: ARGO mapping donor::cause_of_death
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    exact_mappings:
    - ARGO:donor.cause_of_death
    rank: 1000
    domain_of:
    - VitalStatus
    range: OntologyClass
    inlined: true
    inlined_as_list: true
  status:
    name: status
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VitalStatus
    range: Status
  survivalTimeInDays:
    name: survivalTimeInDays
    annotations:
      rank:
        tag: rank
        value: 4
    description: ARGO mapping donor::survival_time
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    exact_mappings:
    - ARGO:donor.survival_time
    rank: 1000
    domain_of:
    - VitalStatus
    range: integer
  timeOfDeath:
    name: timeOfDeath
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    domain_of:
    - VitalStatus
    range: TimeElement
    inlined: true
    inlined_as_list: true

Induced

name: VitalStatus
description: ''
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
attributes:
  causeOfDeath:
    name: causeOfDeath
    annotations:
      rank:
        tag: rank
        value: 3
    description: ARGO mapping donor::cause_of_death
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    exact_mappings:
    - ARGO:donor.cause_of_death
    rank: 1000
    alias: causeOfDeath
    owner: VitalStatus
    domain_of:
    - VitalStatus
    range: OntologyClass
    inlined: true
    inlined_as_list: true
  status:
    name: status
    annotations:
      rank:
        tag: rank
        value: 1
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: status
    owner: VitalStatus
    domain_of:
    - VitalStatus
    range: Status
  survivalTimeInDays:
    name: survivalTimeInDays
    annotations:
      rank:
        tag: rank
        value: 4
    description: ARGO mapping donor::survival_time
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    exact_mappings:
    - ARGO:donor.survival_time
    rank: 1000
    alias: survivalTimeInDays
    owner: VitalStatus
    domain_of:
    - VitalStatus
    range: integer
  timeOfDeath:
    name: timeOfDeath
    annotations:
      rank:
        tag: rank
        value: 2
    description: ''
    from_schema: https://w3id.org/linkml/phenopackets/phenopackets
    rank: 1000
    alias: timeOfDeath
    owner: VitalStatus
    domain_of:
    - VitalStatus
    range: TimeElement
    inlined: true
    inlined_as_list: true