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Slot: histologicalDiagnosis

This is the pathologist’s diagnosis and may often represent a refinement of the clinical diagnosis given in the Patient/Clinical module. Should use the same terminology as diagnosis, but represent the pathologist’s findings. Normal samples would be tagged with the term "NCIT:C38757", "Negative Finding" ARGO mapping specimen::tumour_histological_type

URI: phenopackets:histologicalDiagnosis

Applicable Classes

Name Description Modifies Slot
Biosample A Biosample refers to a unit of biological material from which the substrate ... no

Properties

Identifier and Mapping Information

Annotations

property value
rank 11

Schema Source

  • from schema: https://w3id.org/linkml/phenopackets/phenopackets

LinkML Source

name: histologicalDiagnosis
annotations:
  rank:
    tag: rank
    value: 11
description: This is the pathologist’s diagnosis and may often represent a refinement
  of the clinical diagnosis given in the Patient/Clinical module. Should use the same
  terminology as diagnosis, but represent the pathologist’s findings. Normal samples
  would be tagged with the term "NCIT:C38757", "Negative Finding" ARGO mapping specimen::tumour_histological_type
from_schema: https://w3id.org/linkml/phenopackets/phenopackets
exact_mappings:
- ARGO:specimen.tumour_histological_type
rank: 1000
alias: histologicalDiagnosis
owner: Biosample
domain_of:
- Biosample
range: OntologyClass
inlined: true
inlined_as_list: true