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Class: MiscellaneousNaturalOrArtificialEnvironment

miscellaneous natural or artificial environment

URI: mixs.vocab:MiscellaneousNaturalOrArtificialEnvironment

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Attributes

Own

  • alkalinity OPT
    • Description: Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
    • range: String
    • Example: 50 milligram per liter None
  • ammonium OPT
    • Description: Concentration of ammonium in the sample
    • range: String
    • Example: 1.5 milligram per liter None
  • biomass OPT
    • Description: Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements
    • range: String
    • Example: total;20 gram None
  • bromide OPT
    • Description: Concentration of bromide
    • range: String
    • Example: 0.05 parts per million None
  • calcium OPT
    • Description: Concentration of calcium in the sample
    • range: String
    • Example: 0.2 micromole per liter None
  • chem_administration OPT
    • Description: List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    • range: String
    • Example: agar [CHEBI:2509];2018-05-11T20:00Z None
  • chloride OPT
    • Description: Concentration of chloride in the sample
    • range: String
    • Example: 5000 milligram per liter None
  • chlorophyll OPT
    • Description: Concentration of chlorophyll
    • range: String
    • Example: 5 milligram per cubic meter None
  • density OPT
    • Description: Density of the sample, which is its mass per unit volume (aka volumetric mass density)
    • range: String
    • Example: 1000 kilogram per cubic meter None
  • diether_lipids OPT
    • Description: Concentration of diether lipids; can include multiple types of diether lipids
    • range: String
    • Example: 0.2 nanogram per liter None
  • diss_carb_dioxide OPT
    • Description: Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample
    • range: String
    • Example: 5 milligram per liter None
  • diss_hydrogen OPT
    • Description: Concentration of dissolved hydrogen
    • range: String
    • Example: 0.3 micromole per liter None
  • diss_inorg_carb OPT
    • Description: Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter
    • range: String
    • Example: 2059 micromole per kilogram None
  • diss_org_nitro OPT
    • Description: Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2
    • range: String
    • Example: 0.05 micromole per liter None
  • diss_oxygen OPT
    • Description: Concentration of dissolved oxygen
    • range: String
    • Example: 175 micromole per kilogram None
  • misc_param OPT
    • Description: Any other measurement performed or parameter collected, that is not listed here
    • range: String
    • Example: Bicarbonate ion concentration;2075 micromole per kilogram None
  • nitrate OPT
    • Description: Concentration of nitrate in the sample
    • range: String
    • Example: 65 micromole per liter None
  • nitrite OPT
    • Description: Concentration of nitrite in the sample
    • range: String
    • Example: 0.5 micromole per liter None
  • nitro OPT
    • Description: Concentration of nitrogen (total)
    • range: String
    • Example: 4.2 micromole per liter None
  • org_carb OPT
    • Description: Concentration of organic carbon
    • range: String
    • Example: 1.5 microgram per liter None
  • org_matter OPT
    • Description: Concentration of organic matter
    • range: String
    • Example: 1.75 milligram per cubic meter None
  • org_nitro OPT
    • Description: Concentration of organic nitrogen
    • range: String
    • Example: 4 micromole per liter None
  • organism_count OPT
    • Description: Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)
    • range: String
    • Example: total prokaryotes;3.5e7 cells per milliliter;qPCR None
  • oxy_stat_samp OPT
    • Description: Oxygenation status of sample
    • range: String
    • Example: aerobic None
  • perturbation OPT
    • Description: Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types
    • range: String
    • Example: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M None
  • ph OPT
    • Description: Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid
    • range: String
    • Example: 7.2 None
  • phosphate OPT
    • Description: Concentration of phosphate
    • range: String
    • Example: 0.7 micromole per liter None
  • phosplipid_fatt_acid OPT
    • Description: Concentration of phospholipid fatty acids; can include multiple values
    • range: String
    • Example: 2.98 milligram per liter None
  • potassium OPT
    • Description: Concentration of potassium in the sample
    • range: String
    • Example: 463 milligram per liter None
  • pressure OPT
    • Description: Pressure to which the sample is subject to, in atmospheres
    • range: String
    • Example: 50 atmosphere None
  • salinity OPT
    • Description: Salinity is the total concentration of all dissolved salts in a water sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater
    • range: String
    • Example: 25 practical salinity unit None
  • samp_store_dur OPT
    • Description: Duration for which the sample was stored
    • range: String
    • Example: P1Y6M None
  • samp_store_loc OPT
    • Description: Location at which sample was stored, usually name of a specific freezer/room
    • range: String
    • Example: Freezer no:5 None
  • samp_store_temp OPT
    • Description: Temperature at which sample was stored, e.g. -80 degree Celsius
    • range: String
    • Example: -80 degree Celsius None
  • samp_vol_we_dna_ext OPT
    • Description: Volume (ml), weight (g) of processed sample, or surface area swabbed from sample for DNA extraction
    • range: String
    • Example: 1500 milliliter None
  • silicate OPT
    • Description: Concentration of silicate
    • range: String
    • Example: 0.05 micromole per liter None
  • sodium OPT
    • Description: Sodium concentration in the sample
    • range: String
    • Example: 10.5 milligram per liter None
  • sulfate OPT
    • Description: Concentration of sulfate in the sample
    • range: String
    • Example: 5 micromole per liter None
  • sulfide OPT
    • Description: Concentration of sulfide in the sample
    • range: String
    • Example: 2 micromole per liter None
  • temp OPT
    • Description: Temperature of the sample at the time of sampling
    • range: String
    • Example: 25 degree Celsius None
  • water_current OPT
    • Description: Measurement of magnitude and direction of flow within a fluid
    • range: String
    • Example: 10 cubic meter per second None