MIxS schema

Minimal Information about any Sequence Standard

Packages

Air - air
- AirME - Combinatorial checklist Metagenome or Environmental with environmental package air
- AirMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package air
- AirMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package air
- AirMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package air
- AirMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package air
- AirMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package air
- AirMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package air
- AirMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package air
- AirMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package air
- AirMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package air
- AirMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package air
BuiltEnvironment - built environment
- BuiltEnvironmentME - Combinatorial checklist Metagenome or Environmental with environmental package built environment
- BuiltEnvironmentMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package built environment
- BuiltEnvironmentMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package built environment
- BuiltEnvironmentMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package built environment
- BuiltEnvironmentMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package built environment
- BuiltEnvironmentMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package built environment
- BuiltEnvironmentMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package built environment
- BuiltEnvironmentMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package built environment
- BuiltEnvironmentMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package built environment
- BuiltEnvironmentMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package built environment
- BuiltEnvironmentMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package built environment
Core - Core package. Do not use this directly, this is used to build other packages
Host-associated - host-associated
- Host-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package host-associated
- Host-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package host-associated
- Host-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package host-associated
- Host-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package host-associated
- Host-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package host-associated
- Host-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package host-associated
- Host-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package host-associated
- Host-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package host-associated
- Host-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package host-associated
- Host-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package host-associated
- Host-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package host-associated
Human-associated - human-associated
- Human-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package human-associated
- Human-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-associated
- Human-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-associated
- Human-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-associated
- Human-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-associated
- Human-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-associated
- Human-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-associated
- Human-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-associated
- Human-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-associated
- Human-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-associated
- Human-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-associated
Human-gut - human-gut
- Human-gutME - Combinatorial checklist Metagenome or Environmental with environmental package human-gut
- Human-gutMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-gut
- Human-gutMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-gut
- Human-gutMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-gut
- Human-gutMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-gut
- Human-gutMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-gut
- Human-gutMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-gut
- Human-gutMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-gut
- Human-gutMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-gut
- Human-gutMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-gut
- Human-gutMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-gut
Human-oral - human-oral
- Human-oralME - Combinatorial checklist Metagenome or Environmental with environmental package human-oral
- Human-oralMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-oral
- Human-oralMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-oral
- Human-oralMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-oral
- Human-oralMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-oral
- Human-oralMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-oral
- Human-oralMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-oral
- Human-oralMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-oral
- Human-oralMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-oral
- Human-oralMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-oral
- Human-oralMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-oral
Human-skin - human-skin
- Human-skinME - Combinatorial checklist Metagenome or Environmental with environmental package human-skin
- Human-skinMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-skin
- Human-skinMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-skin
- Human-skinMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-skin
- Human-skinMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-skin
- Human-skinMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-skin
- Human-skinMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-skin
- Human-skinMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-skin
- Human-skinMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-skin
- Human-skinMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-skin
- Human-skinMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-skin
Human-vaginal - human-vaginal
- Human-vaginalME - Combinatorial checklist Metagenome or Environmental with environmental package human-vaginal
- Human-vaginalMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-vaginal
- Human-vaginalMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package human-vaginal
- Human-vaginalMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package human-vaginal
- Human-vaginalMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package human-vaginal
- Human-vaginalMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package human-vaginal
- Human-vaginalMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package human-vaginal
- Human-vaginalMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package human-vaginal
- Human-vaginalMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package human-vaginal
- Human-vaginalMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package human-vaginal
- Human-vaginalMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package human-vaginal
HydrocarbonResources-cores - hydrocarbon resources-cores
- HydrocarbonResources-coresME - Combinatorial checklist Metagenome or Environmental with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package hydrocarbon resources-cores
- HydrocarbonResources-coresMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package hydrocarbon resources-cores
HydrocarbonResources-fluidsSwabs - hydrocarbon resources-fluids/swabs
- HydrocarbonResources-fluidsSwabsME - Combinatorial checklist Metagenome or Environmental with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package hydrocarbon resources-fluids_swabs
- HydrocarbonResources-fluidsSwabsMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package hydrocarbon resources-fluids_swabs
MicrobialMatBiofilm - microbial mat/biofilm
- MicrobialMatBiofilmME - Combinatorial checklist Metagenome or Environmental with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package microbial mat_biofilm
- MicrobialMatBiofilmMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package microbial mat_biofilm
MiscellaneousNaturalOrArtificialEnvironment - miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentME - Combinatorial checklist Metagenome or Environmental with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package miscellaneous natural or artificial environment
- MiscellaneousNaturalOrArtificialEnvironmentMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package miscellaneous natural or artificial environment
Plant-associated - plant-associated
- Plant-associatedME - Combinatorial checklist Metagenome or Environmental with environmental package plant-associated
- Plant-associatedMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package plant-associated
- Plant-associatedMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package plant-associated
- Plant-associatedMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package plant-associated
- Plant-associatedMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package plant-associated
- Plant-associatedMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package plant-associated
- Plant-associatedMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package plant-associated
- Plant-associatedMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package plant-associated
- Plant-associatedMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package plant-associated
- Plant-associatedMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package plant-associated
- Plant-associatedMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package plant-associated
QuantityValue - used to record a measurement
Sediment - sediment
- SedimentME - Combinatorial checklist Metagenome or Environmental with environmental package sediment
- SedimentMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package sediment
- SedimentMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package sediment
- SedimentMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package sediment
- SedimentMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package sediment
- SedimentMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package sediment
- SedimentMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package sediment
- SedimentMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package sediment
- SedimentMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package sediment
- SedimentMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package sediment
- SedimentMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package sediment
Soil - soil
- SoilME - Combinatorial checklist Metagenome or Environmental with environmental package soil
- SoilMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package soil
- SoilMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package soil
- SoilMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package soil
- SoilMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package soil
- SoilMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package soil
- SoilMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package soil
- SoilMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package soil
- SoilMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package soil
- SoilMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package soil
- SoilMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package soil
WastewaterSludge - wastewater/sludge
- WastewaterSludgeME - Combinatorial checklist Metagenome or Environmental with environmental package wastewater_sludge
- WastewaterSludgeMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package wastewater_sludge
- WastewaterSludgeMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package wastewater_sludge
- WastewaterSludgeMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package wastewater_sludge
- WastewaterSludgeMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package wastewater_sludge
- WastewaterSludgeMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package wastewater_sludge
- WastewaterSludgeMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package wastewater_sludge
- WastewaterSludgeMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package wastewater_sludge
- WastewaterSludgeMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package wastewater_sludge
- WastewaterSludgeMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package wastewater_sludge
- WastewaterSludgeMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package wastewater_sludge
Water - water
- WaterME - Combinatorial checklist Metagenome or Environmental with environmental package water
- WaterMIGSBacteria - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package water
- WaterMIGSEukaryote - Combinatorial checklist Minimal Information about a Genome Sequence: eukaryote with environmental package water
- WaterMIGSOrg - Combinatorial checklist Minimal Information about a Genome Sequence: org with environmental package water
- WaterMIGSPlant - Combinatorial checklist Minimal Information about a Genome Sequence: plant with environmental package water
- WaterMIGSVirus - Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package water
- WaterMIMAG - Combinatorial checklist Minimum Information About a Metagenome-Assembled Genome with environmental package water
- WaterMIMARKSSpecimen - Combinatorial checklist Minimal Information about a Marker Specimen: specimen with environmental package water
- WaterMIMARKSSurvey - Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package water
- WaterMISAG - Combinatorial checklist Minimum Information About a Single Amplified Genome with environmental package water
- WaterMIUVIG - Combinatorial checklist Minimum Information About an Uncultivated Virus Genome with environmental package water

Checklists

ME - Metagenome or Environmental
MIGSBacteria - Minimal Information about a Genome Sequence: cultured bacteria/archaea
MIGSEukaryote - Minimal Information about a Genome Sequence: eukaryote
MIGSOrg - Minimal Information about a Genome Sequence: org
MIGSPlant - Minimal Information about a Genome Sequence: plant
MIGSVirus - Minimal Information about a Genome Sequence: cultured bacteria/archaea
MIMAG - Minimum Information About a Metagenome-Assembled Genome
MIMARKSSpecimen - Minimal Information about a Marker Specimen: specimen
MIMARKSSurvey - Minimal Information about a Marker Specimen: survey
MISAG - Minimum Information About a Single Amplified Genome
MIUVIG - Minimum Information About an Uncultivated Virus Genome

Slots

core field - basic fields
- abs_air_humidity - Actual mass of water vapor - mh20 - present in the air water vapor mixture
  - built environment➞abs_air_humidity
- add_recov_method - Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-fluids_swabs➞add_recov_method
- additional_info - Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary
  - hydrocarbon resources-cores➞additional_info
  - hydrocarbon resources-fluids_swabs➞additional_info
- address - The street name and building number where the sampling occurred.
  - built environment➞address
- adj_room - List of rooms (room number, room name) immediately adjacent to the sampling room
  - built environment➞adj_room
- aero_struc - Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together
  - built environment➞aero_struc
- agrochem_addition - Addition of fertilizers, pesticides, etc. - amount and time of applications
  - soil➞agrochem_addition
- air_temp_regm - Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens
  - plant-associated➞air_temp_regm
- al_sat - Aluminum saturation (esp. For tropical soils)
  - soil➞al_sat
- al_sat_meth - Reference or method used in determining Al saturation
  - soil➞al_sat_meth
- alkalinity - Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
  - hydrocarbon resources-cores➞alkalinity
  - hydrocarbon resources-fluids_swabs➞alkalinity
  - microbial mat_biofilm➞alkalinity
  - miscellaneous natural or artificial environment➞alkalinity
  - sediment➞alkalinity
  - wastewater_sludge➞alkalinity
  - water➞alkalinity
- alkalinity_method - Method used for alkalinity measurement
  - hydrocarbon resources-cores➞alkalinity_method
  - hydrocarbon resources-fluids_swabs➞alkalinity_method
  - water➞alkalinity_method
- alkyl_diethers - Concentration of alkyl diethers
  - microbial mat_biofilm➞alkyl_diethers
  - sediment➞alkyl_diethers
  - water➞alkyl_diethers
- aminopept_act - Measurement of aminopeptidase activity
  - microbial mat_biofilm➞aminopept_act
  - sediment➞aminopept_act
  - water➞aminopept_act
- ammonium - Concentration of ammonium in the sample
  - hydrocarbon resources-cores➞ammonium
  - hydrocarbon resources-fluids_swabs➞ammonium
  - microbial mat_biofilm➞ammonium
  - miscellaneous natural or artificial environment➞ammonium
  - sediment➞ammonium
  - water➞ammonium
- amniotic_fluid_color - Specification of the color of the amniotic fluid sample
  - human-associated➞amniotic_fluid_color
- amount_light - The unit of illuminance and luminous emittance, measuring luminous flux per unit area
  - built environment➞amount_light
- ances_data - Information about either pedigree or other ancestral information description (e.g. parental variety in case of mutant or selection), e.g. A/3*B (meaning [(A x B) x B] x B)
  - host-associated➞ances_data
  - plant-associated➞ances_data
- annual_precpt - The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps.
  - soil➞annual_precpt
- annual_temp - Mean annual temperature
  - soil➞annual_temp
- antibiotic_regm - Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens
  - plant-associated➞antibiotic_regm
- api - API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1¬∞ API)
  - hydrocarbon resources-cores➞api
  - hydrocarbon resources-fluids_swabs➞api
- arch_struc - An architectural structure is a human-made, free-standing, immobile outdoor construction
  - built environment➞arch_struc
- aromatics_pc - Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)
  - hydrocarbon resources-cores➞aromatics_pc
  - hydrocarbon resources-fluids_swabs➞aromatics_pc
- asphaltenes_pc - Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)
  - hydrocarbon resources-cores➞asphaltenes_pc
  - hydrocarbon resources-fluids_swabs➞asphaltenes_pc
- atmospheric_data - Measurement of atmospheric data; can include multiple data
  - water➞atmospheric_data
- avg_dew_point - The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day
  - built environment➞avg_dew_point
- avg_occup - Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room.
  - built environment➞avg_occup
- avg_temp - The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day
  - built environment➞avg_temp
- bac_prod - Bacterial production in the water column measured by isotope uptake
  - water➞bac_prod
- bac_resp - Measurement of bacterial respiration in the water column
  - water➞bac_resp
- bacteria_carb_prod - Measurement of bacterial carbon production
  - microbial mat_biofilm➞bacteria_carb_prod
  - sediment➞bacteria_carb_prod
  - water➞bacteria_carb_prod
- barometric_press - Force per unit area exerted against a surface by the weight of air above that surface
  - air➞barometric_press
- basin - Name of the basin (e.g. Campos)
  - hydrocarbon resources-cores➞basin
  - hydrocarbon resources-fluids_swabs➞basin
- bathroom_count - The number of bathrooms in the building
  - built environment➞bathroom_count
- bedroom_count - The number of bedrooms in the building
  - built environment➞bedroom_count
- benzene - Concentration of benzene in the sample
  - hydrocarbon resources-cores➞benzene
  - hydrocarbon resources-fluids_swabs➞benzene
- biochem_oxygen_dem - Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period
  - wastewater_sludge➞biochem_oxygen_dem
- biocide - List of biocides (commercial name of product and supplier) and date of administration
  - hydrocarbon resources-fluids_swabs➞biocide
- biocide_admin_method - Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)
  - hydrocarbon resources-fluids_swabs➞biocide_admin_method
- biol_stat - The level of genome modification.
  - host-associated➞biol_stat
  - plant-associated➞biol_stat
- biomass - Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements
  - microbial mat_biofilm➞biomass
  - miscellaneous natural or artificial environment➞biomass
  - sediment➞biomass
  - water➞biomass
- biotic_regm - Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi.
  - plant-associated➞biotic_regm
- birth_control - Specification of birth control medication used
  - human-vaginal➞birth_control
- bishomohopanol - Concentration of bishomohopanol
  - microbial mat_biofilm➞bishomohopanol
  - sediment➞bishomohopanol
  - water➞bishomohopanol
- blood_blood_disord - History of blood disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, hematopoietic system disease (https://disease-ontology.org/?id=DOID:74).
  - human-associated➞blood_blood_disord
- blood_press_diast - Resting diastolic blood pressure, measured as mm mercury
  - host-associated➞blood_press_diast
- blood_press_syst - Resting systolic blood pressure, measured as mm mercury
  - host-associated➞blood_press_syst
- bromide - Concentration of bromide
  - microbial mat_biofilm➞bromide
  - miscellaneous natural or artificial environment➞bromide
  - sediment➞bromide
  - water➞bromide
- build_docs - The building design, construction and operation documents
  - built environment➞build_docs
- build_occup_type - The primary function for which a building or discrete part of a building is intended to be used
  - built environment➞build_occup_type
- building_setting - A location (geography) where a building is set
  - built environment➞building_setting
- built_struc_age - The age of the built structure since construction
  - built environment➞built_struc_age
- built_struc_set - The characterization of the location of the built structure as high or low human density
  - built environment➞built_struc_set
- built_struc_type - A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads
  - built environment➞built_struc_type
- calcium - Concentration of calcium in the sample
  - hydrocarbon resources-cores➞calcium
  - hydrocarbon resources-fluids_swabs➞calcium
  - microbial mat_biofilm➞calcium
  - miscellaneous natural or artificial environment➞calcium
  - sediment➞calcium
  - water➞calcium
- carb_dioxide - Carbon dioxide (gas) amount or concentration at the time of sampling
  - air➞carb_dioxide
  - built environment➞carb_dioxide
- carb_monoxide - Carbon monoxide (gas) amount or concentration at the time of sampling
  - air➞carb_monoxide
- carb_nitro_ratio - Ratio of amount or concentrations of carbon to nitrogen
  - microbial mat_biofilm➞carb_nitro_ratio
  - sediment➞carb_nitro_ratio
  - water➞carb_nitro_ratio
- ceil_area - The area of the ceiling space within the room
  - built environment➞ceil_area
- ceil_cond - The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  - built environment➞ceil_cond
- ceil_finish_mat - The type of material used to finish a ceiling
  - built environment➞ceil_finish_mat
- ceil_struc - The construction format of the ceiling
  - built environment➞ceil_struc
- ceil_texture - The feel, appearance, or consistency of a ceiling surface
  - built environment➞ceil_texture
- ceil_thermal_mass - The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow
  - built environment➞ceil_thermal_mass
- ceil_type - The type of ceiling according to the ceiling's appearance or construction
  - built environment➞ceil_type
- ceil_water_mold - Signs of the presence of mold or mildew on the ceiling
  - built environment➞ceil_water_mold
- chem_administration - List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
  - air➞chem_administration
  - host-associated➞chem_administration
  - human-associated➞chem_administration
  - human-gut➞chem_administration
  - human-oral➞chem_administration
  - human-skin➞chem_administration
  - human-vaginal➞chem_administration
  - microbial mat_biofilm➞chem_administration
  - miscellaneous natural or artificial environment➞chem_administration
  - plant-associated➞chem_administration
  - sediment➞chem_administration
  - wastewater_sludge➞chem_administration
  - water➞chem_administration
- chem_mutagen - Treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mutagen regimens
  - plant-associated➞chem_mutagen
- chem_oxygen_dem - A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite
  - wastewater_sludge➞chem_oxygen_dem
- chem_treat_method - Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)
  - hydrocarbon resources-fluids_swabs➞chem_treat_method
- chem_treatment - List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included
  - hydrocarbon resources-fluids_swabs➞chem_treatment
- chloride - Concentration of chloride in the sample
  - hydrocarbon resources-cores➞chloride
  - hydrocarbon resources-fluids_swabs➞chloride
  - microbial mat_biofilm➞chloride
  - miscellaneous natural or artificial environment➞chloride
  - sediment➞chloride
  - water➞chloride
- chlorophyll - Concentration of chlorophyll
  - microbial mat_biofilm➞chlorophyll
  - miscellaneous natural or artificial environment➞chlorophyll
  - sediment➞chlorophyll
  - water➞chlorophyll
- climate_environment - Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates
  - plant-associated➞climate_environment
- conduc - Electrical conductivity of water
  - water➞conduc
- cool_syst_id - The cooling system identifier
  - built environment➞cool_syst_id
- crop_rotation - Whether or not crop is rotated, and if yes, rotation schedule
  - soil➞crop_rotation
- cult_root_med - Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors.
  - plant-associated➞cult_root_med
- cur_land_use - Present state of sample site
  - soil➞cur_land_use
- cur_vegetation - Vegetation classification from one or more standard classification systems, or agricultural crop
  - soil➞cur_vegetation
- cur_vegetation_meth - Reference or method used in vegetation classification
  - soil➞cur_vegetation_meth
- date_last_rain - The date of the last time it rained
  - built environment➞date_last_rain
- density - Density of the sample, which is its mass per unit volume (aka volumetric mass density)
  - hydrocarbon resources-cores➞density
  - hydrocarbon resources-fluids_swabs➞density
  - miscellaneous natural or artificial environment➞density
  - sediment➞density
  - water➞density
- depos_env - Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞depos_env
  - hydrocarbon resources-fluids_swabs➞depos_env
- dermatology_disord - History of dermatology disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, skin disease (https://disease-ontology.org/?id=DOID:37).
  - human-skin➞dermatology_disord
- dew_point - The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water.
  - built environment➞dew_point
- diet_last_six_month - Specification of major diet changes in the last six months, if yes the change should be specified
  - human-associated➞diet_last_six_month
- diether_lipids - Concentration of diether lipids; can include multiple types of diether lipids
  - microbial mat_biofilm➞diether_lipids
  - miscellaneous natural or artificial environment➞diether_lipids
  - sediment➞diether_lipids
  - water➞diether_lipids
- diss_carb_dioxide - Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample
  - hydrocarbon resources-cores➞diss_carb_dioxide
  - hydrocarbon resources-fluids_swabs➞diss_carb_dioxide
  - microbial mat_biofilm➞diss_carb_dioxide
  - miscellaneous natural or artificial environment➞diss_carb_dioxide
  - sediment➞diss_carb_dioxide
  - water➞diss_carb_dioxide
- diss_hydrogen - Concentration of dissolved hydrogen
  - microbial mat_biofilm➞diss_hydrogen
  - miscellaneous natural or artificial environment➞diss_hydrogen
  - sediment➞diss_hydrogen
  - water➞diss_hydrogen
- diss_inorg_carb - Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter
  - hydrocarbon resources-cores➞diss_inorg_carb
  - hydrocarbon resources-fluids_swabs➞diss_inorg_carb
  - microbial mat_biofilm➞diss_inorg_carb
  - miscellaneous natural or artificial environment➞diss_inorg_carb
  - sediment➞diss_inorg_carb
  - water➞diss_inorg_carb
- diss_inorg_nitro - Concentration of dissolved inorganic nitrogen
  - water➞diss_inorg_nitro
- diss_inorg_phosp - Concentration of dissolved inorganic phosphorus in the sample
  - hydrocarbon resources-cores➞diss_inorg_phosp
  - hydrocarbon resources-fluids_swabs➞diss_inorg_phosp
  - water➞diss_inorg_phosp
- diss_iron - Concentration of dissolved iron in the sample
  - hydrocarbon resources-cores➞diss_iron
  - hydrocarbon resources-fluids_swabs➞diss_iron
- diss_org_carb - Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid
  - hydrocarbon resources-cores➞diss_org_carb
  - hydrocarbon resources-fluids_swabs➞diss_org_carb
  - microbial mat_biofilm➞diss_org_carb
  - sediment➞diss_org_carb
  - water➞diss_org_carb
- diss_org_nitro - Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2
  - microbial mat_biofilm➞diss_org_nitro
  - miscellaneous natural or artificial environment➞diss_org_nitro
  - sediment➞diss_org_nitro
  - water➞diss_org_nitro
- diss_oxygen - Concentration of dissolved oxygen
  - microbial mat_biofilm➞diss_oxygen
  - miscellaneous natural or artificial environment➞diss_oxygen
  - sediment➞diss_oxygen
  - water➞diss_oxygen
- diss_oxygen_fluid - Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic).
  - hydrocarbon resources-cores➞diss_oxygen_fluid
  - hydrocarbon resources-fluids_swabs➞diss_oxygen_fluid
- dominant_hand - Dominant hand of the subject
  - human-skin➞dominant_hand
- door_comp_type - The composite type of the door
  - built environment➞door_comp_type
- door_cond - The phsical condition of the door
  - built environment➞door_cond
- door_direct - The direction the door opens
  - built environment➞door_direct
- door_loc - The relative location of the door in the room
  - built environment➞door_loc
- door_mat - The material the door is composed of
  - built environment➞door_mat
- door_move - The type of movement of the door
  - built environment➞door_move
- door_size - The size of the door
  - built environment➞door_size
- door_type - The type of door material
  - built environment➞door_type
- door_type_metal - The type of metal door
  - built environment➞door_type_metal
- door_type_wood - The type of wood door
  - built environment➞door_type_wood
- door_water_mold - Signs of the presence of mold or mildew on a door
  - built environment➞door_water_mold
- douche - Date of most recent douche
  - human-vaginal➞douche
- down_par - Visible waveband radiance and irradiance measurements in the water column
  - water➞down_par
- drainage_class - Drainage classification from a standard system such as the USDA system
  - soil➞drainage_class
- drawings - The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents
  - built environment➞drawings
- drug_usage - Any drug used by subject and the frequency of usage; can include multiple drugs used
  - human-associated➞drug_usage
- efficiency_percent - Percentage of volatile solids removed from the anaerobic digestor
  - wastewater_sludge➞efficiency_percent
- elevator - The number of elevators within the built structure
  - built environment➞elevator
- emulsions - Amount or concentration of substances such as paints, adhesives, mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion types
  - wastewater_sludge➞emulsions
- escalator - The number of escalators within the built structure
  - built environment➞escalator
- ethnicity - A category of people who identify with each other, usually on the basis of presumed similarities such as a common language, ancestry, history, society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups
  - human-associated➞ethnicity
  - human-gut➞ethnicity
  - human-oral➞ethnicity
  - human-skin➞ethnicity
  - human-vaginal➞ethnicity
- ethylbenzene - Concentration of ethylbenzene in the sample
  - hydrocarbon resources-cores➞ethylbenzene
  - hydrocarbon resources-fluids_swabs➞ethylbenzene
- exp_duct - The amount of exposed ductwork in the room
  - built environment➞exp_duct
- exp_pipe - The number of exposed pipes in the room
  - built environment➞exp_pipe
- ext_door - The number of exterior doors in the built structure
  - built environment➞ext_door
- ext_wall_orient - The orientation of the exterior wall
  - built environment➞ext_wall_orient
- ext_window_orient - The compass direction the exterior window of the room is facing
  - built environment➞ext_window_orient
- extreme_event - Unusual physical events that may have affected microbial populations
  - soil➞extreme_event
- extreme_salinity - Measured salinity
  - soil➞extreme_salinity
- fao_class - Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups
  - soil➞fao_class
- fertilizer_regm - Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens
  - plant-associated➞fertilizer_regm
- field - Name of the hydrocarbon field (e.g. Albacora)
  - hydrocarbon resources-cores➞field
  - hydrocarbon resources-fluids_swabs➞field
- filter_type - A device which removes solid particulates or airborne molecular contaminants
  - built environment➞filter_type
- fire - Historical and/or physical evidence of fire
  - soil➞fire
- fireplace_type - A firebox with chimney
  - built environment➞fireplace_type
- flooding - Historical and/or physical evidence of flooding
  - soil➞flooding
- floor_age - The time period since installment of the carpet or flooring
  - built environment➞floor_age
- floor_area - The area of the floor space within the room
  - built environment➞floor_area
- floor_cond - The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  - built environment➞floor_cond
- floor_count - The number of floors in the building, including basements and mechanical penthouse
  - built environment➞floor_count
- floor_finish_mat - The floor covering type; the finished surface that is walked on
  - built environment➞floor_finish_mat
- floor_struc - Refers to the structural elements and subfloor upon which the finish flooring is installed
  - built environment➞floor_struc
- floor_thermal_mass - The ability of the floor to provide inertia against temperature fluctuations
  - built environment➞floor_thermal_mass
- floor_water_mold - Signs of the presence of mold or mildew in a room
  - built environment➞floor_water_mold
- fluor - Raw or converted fluorescence of water
  - water➞fluor
- foetal_health_stat - Specification of foetal health status, should also include abortion
  - human-associated➞foetal_health_stat
- freq_clean - The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.
  - built environment➞freq_clean
- freq_cook - The number of times a meal is cooked per week
  - built environment➞freq_cook
- fungicide_regm - Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens
  - plant-associated➞fungicide_regm
- furniture - The types of furniture present in the sampled room
  - built environment➞furniture
- gaseous_environment - Use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens
  - plant-associated➞gaseous_environment
- gaseous_substances - Amount or concentration of substances such as hydrogen sulfide, carbon dioxide, methane, etc.; can include multiple substances
  - wastewater_sludge➞gaseous_substances
- gastrointest_disord - History of gastrointestinal tract disorders; can include multiple disorders. History of blood disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77).
  - human-gut➞gastrointest_disord
- gender_restroom - The gender type of the restroom
  - built environment➞gender_restroom
- genetic_mod - Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection
  - host-associated➞genetic_mod
  - plant-associated➞genetic_mod
- gestation_state - Specification of the gestation state
  - human-associated➞gestation_state
- glucosidase_act - Measurement of glucosidase activity
  - microbial mat_biofilm➞glucosidase_act
  - sediment➞glucosidase_act
  - water➞glucosidase_act
- gravidity - Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used
  - host-associated➞gravidity
- gravity - Information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple treatments
  - plant-associated➞gravity
- growth_facil - Type of facility where the sampled plant was grown; controlled vocabulary: growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research
  - plant-associated➞growth_facil
- growth_habit - Characteristic shape, appearance or growth form of a plant species
  - plant-associated➞growth_habit
- growth_hormone_regm - Information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple growth hormone regimens
  - plant-associated➞growth_hormone_regm
- gynecologic_disord - History of gynecological disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, female reproductive system disease (https://disease-ontology.org/?id=DOID:229).
  - human-vaginal➞gynecologic_disord
- hall_count - The total count of hallways and cooridors in the built structure
  - built environment➞hall_count
- handidness - The handidness of the individual sampled
  - built environment➞handidness
- hc_produced - Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate, etc). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞hc_produced
  - hydrocarbon resources-fluids_swabs➞hc_produced
- hcr - Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR defined as a natural environmental feature containing large amounts of hydrocarbons at high concentrations potentially suitable for commercial exploitation. This term should not be confused with the Hydrocarbon Occurrence term which also includes hydrocarbon-rich environments with currently limited commercial interest such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞hcr
  - hydrocarbon resources-fluids_swabs➞hcr
- hcr_fw_salinity - Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS
  - hydrocarbon resources-cores➞hcr_fw_salinity
  - hydrocarbon resources-fluids_swabs➞hcr_fw_salinity
- hcr_geol_age - Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞hcr_geol_age
  - hydrocarbon resources-fluids_swabs➞hcr_geol_age
- hcr_pressure - Original pressure of the hydrocarbon resource
  - hydrocarbon resources-cores➞hcr_pressure
  - hydrocarbon resources-fluids_swabs➞hcr_pressure
- hcr_temp - Original temperature of the hydrocarbon resource
  - hydrocarbon resources-cores➞hcr_temp
  - hydrocarbon resources-fluids_swabs➞hcr_temp
- heat_cool_type - Methods of conditioning or heating a room or building
  - built environment➞heat_cool_type
- heat_deliv_loc - The location of heat delivery within the room
  - built environment➞heat_deliv_loc
- heat_sys_deliv_meth - The method by which the heat is delivered through the system
  - built environment➞heat_sys_deliv_meth
- heat_system_id - The heating system identifier
  - built environment➞heat_system_id
- heavy_metals - Heavy metals present in the sequenced sample and their concentrations. For multiple heavy metals and concentrations, add multiple copies of this field.
  - soil➞heavy_metals
- heavy_metals_meth - Reference or method used in determining heavy metals
  - soil➞heavy_metals_meth
- height_carper_fiber - The average carpet fiber height in the indoor environment
  - built environment➞height_carper_fiber
- herbicide_regm - Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞herbicide_regm
- horizon - Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath
  - soil➞horizon
- horizon_meth - Reference or method used in determining the horizon
  - soil➞horizon_meth
- host_age - Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees
  - host-associated➞host_age
  - human-associated➞host_age
  - human-gut➞host_age
  - human-oral➞host_age
  - human-skin➞host_age
  - human-vaginal➞host_age
  - plant-associated➞host_age
- host_body_habitat - Original body habitat where the sample was obtained from
  - host-associated➞host_body_habitat
- host_body_mass_index - Body mass index, calculated as weight/(height)squared
  - human-associated➞host_body_mass_index
  - human-gut➞host_body_mass_index
  - human-oral➞host_body_mass_index
  - human-skin➞host_body_mass_index
  - human-vaginal➞host_body_mass_index
- host_body_product - Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon
  - host-associated➞host_body_product
  - human-associated➞host_body_product
  - human-gut➞host_body_product
  - human-oral➞host_body_product
  - human-skin➞host_body_product
  - human-vaginal➞host_body_product
- host_body_site - Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON
  - host-associated➞host_body_site
  - human-associated➞host_body_site
  - human-gut➞host_body_site
  - human-oral➞host_body_site
  - human-skin➞host_body_site
  - human-vaginal➞host_body_site
- host_body_temp - Core body temperature of the host when sample was collected
  - host-associated➞host_body_temp
  - human-associated➞host_body_temp
  - human-gut➞host_body_temp
  - human-oral➞host_body_temp
  - human-skin➞host_body_temp
  - human-vaginal➞host_body_temp
- host_color - The color of host
  - host-associated➞host_color
- host_common_name - Common name of the host.
  - host-associated➞host_common_name
  - plant-associated➞host_common_name
- host_diet - Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
  - host-associated➞host_diet
  - human-associated➞host_diet
  - human-gut➞host_diet
  - human-oral➞host_diet
  - human-skin➞host_diet
  - human-vaginal➞host_diet
- host_dry_mass - Measurement of dry mass
  - host-associated➞host_dry_mass
  - plant-associated➞host_dry_mass
- host_family_relation - Familial relationships to other hosts in the same study; can include multiple relationships
  - host-associated➞host_family_relation
  - human-associated➞host_family_relation
  - human-gut➞host_family_relation
  - human-oral➞host_family_relation
  - human-skin➞host_family_relation
  - human-vaginal➞host_family_relation
- host_genotype - Observed genotype
  - host-associated➞host_genotype
  - human-associated➞host_genotype
  - human-gut➞host_genotype
  - human-oral➞host_genotype
  - human-skin➞host_genotype
  - human-vaginal➞host_genotype
  - plant-associated➞host_genotype
- host_growth_cond - Literature reference giving growth conditions of the host
  - host-associated➞host_growth_cond
- host_height - The height of subject
  - host-associated➞host_height
  - human-associated➞host_height
  - human-gut➞host_height
  - human-oral➞host_height
  - human-skin➞host_height
  - human-vaginal➞host_height
  - plant-associated➞host_height
- host_hiv_stat - HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]
  - human-associated➞host_hiv_stat
- host_infra_spec_name - Taxonomic information about the host below subspecies level
  - host-associated➞host_infra_spec_name
  - plant-associated➞host_infra_spec_name
- host_infra_spec_rank - Taxonomic rank information about the host below subspecies level, such as variety, form, rank etc.
  - host-associated➞host_infra_spec_rank
  - plant-associated➞host_infra_spec_rank
- host_last_meal - Content of last meal and time since feeding; can include multiple values
  - host-associated➞host_last_meal
  - human-associated➞host_last_meal
  - human-gut➞host_last_meal
  - human-oral➞host_last_meal
  - human-skin➞host_last_meal
  - human-vaginal➞host_last_meal
- host_length - The length of subject
  - host-associated➞host_length
  - plant-associated➞host_length
- host_life_stage - Description of life stage of host
  - host-associated➞host_life_stage
  - plant-associated➞host_life_stage
- host_occupation - Most frequent job performed by subject
  - human-associated➞host_occupation
  - human-gut➞host_occupation
  - human-oral➞host_occupation
  - human-skin➞host_occupation
  - human-vaginal➞host_occupation
- host_phenotype - Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
  - host-associated➞host_phenotype
  - human-associated➞host_phenotype
  - human-gut➞host_phenotype
  - human-oral➞host_phenotype
  - human-skin➞host_phenotype
  - human-vaginal➞host_phenotype
  - plant-associated➞host_phenotype
- host_pulse - Resting pulse, measured as beats per minute
  - human-associated➞host_pulse
  - human-gut➞host_pulse
  - human-oral➞host_pulse
  - human-skin➞host_pulse
  - human-vaginal➞host_pulse
- host_sex - Gender or physical sex of the host.
  - host-associated➞host_sex
  - human-associated➞host_sex
  - human-gut➞host_sex
  - human-oral➞host_sex
  - human-skin➞host_sex
  - human-vaginal➞host_sex
- host_shape - Morphological shape of host
  - host-associated➞host_shape
- host_subject_id - A unique identifier by which each subject can be referred to, de-identified.
  - host-associated➞host_subject_id
  - human-associated➞host_subject_id
  - human-gut➞host_subject_id
  - human-oral➞host_subject_id
  - human-skin➞host_subject_id
  - human-vaginal➞host_subject_id
- host_subspecf_genlin - Information about the genetic distinctness of the host organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.
  - host-associated➞host_subspecf_genlin
  - plant-associated➞host_subspecf_genlin
- host_substrate - The growth substrate of the host.
  - host-associated➞host_substrate
- host_symbiont - The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host.
  - host-associated➞host_symbiont
  - human-associated➞host_symbiont
  - human-gut➞host_symbiont
  - human-oral➞host_symbiont
  - human-skin➞host_symbiont
  - human-vaginal➞host_symbiont
  - plant-associated➞host_symbiont
- host_taxid - NCBI taxon id of the host, e.g. 9606
  - host-associated➞host_taxid
  - plant-associated➞host_taxid
- host_tot_mass - Total mass of the host at collection, the unit depends on host
  - host-associated➞host_tot_mass
  - human-associated➞host_tot_mass
  - human-gut➞host_tot_mass
  - human-oral➞host_tot_mass
  - human-skin➞host_tot_mass
  - human-vaginal➞host_tot_mass
  - plant-associated➞host_tot_mass
- host_wet_mass - Measurement of wet mass
  - plant-associated➞host_wet_mass
- hrt - Whether subject had hormone replacement theraphy, and if yes start date
  - human-vaginal➞hrt
- humidity - Amount of water vapour in the air, at the time of sampling
  - air➞humidity
- humidity_regm - Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞humidity_regm
- hysterectomy - Specification of whether hysterectomy was performed
  - human-vaginal➞hysterectomy
- ihmc_medication_code - Can include multiple medication codes
  - human-associated➞ihmc_medication_code
  - human-gut➞ihmc_medication_code
  - human-oral➞ihmc_medication_code
  - human-skin➞ihmc_medication_code
  - human-vaginal➞ihmc_medication_code
- indoor_space - A distinguishable space within a structure, the purpose for which discrete areas of a building is used
  - built environment➞indoor_space
- indoor_surf - Type of indoor surface
  - built environment➞indoor_surf
- indust_eff_percent - Percentage of industrial effluents received by wastewater treatment plant
  - wastewater_sludge➞indust_eff_percent
- inorg_particles - Concentration of particles such as sand, grit, metal particles, ceramics, etc.; can include multiple particles
  - wastewater_sludge➞inorg_particles
- inside_lux - The recorded value at sampling time (power density)
  - built environment➞inside_lux
- int_wall_cond - The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  - built environment➞int_wall_cond
- iw_bt_date_well - Injection water breakthrough date per well following a secondary and/or tertiary recovery
  - hydrocarbon resources-fluids_swabs➞iw_bt_date_well
- iwf - Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)
  - hydrocarbon resources-fluids_swabs➞iwf
- kidney_disord - History of kidney disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, kidney disease (https://disease-ontology.org/?id=DOID:557).
  - human-associated➞kidney_disord
- last_clean - The last time the floor was cleaned (swept, mopped, vacuumed)
  - built environment➞last_clean
- light_intensity - Measurement of light intensity
  - water➞light_intensity
- light_regm - Information about treatment(s) involving exposure to light, including both light intensity and quality.
  - plant-associated➞light_regm
- light_type - Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light
  - built environment➞light_type
- link_addit_analys - Link to additional analysis results performed on the sample
  - soil➞link_addit_analys
- link_class_info - Link to digitized soil maps or other soil classification information
  - soil➞link_class_info
- link_climate_info - Link to climate resource
  - soil➞link_climate_info
- lithology - Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞lithology
  - hydrocarbon resources-fluids_swabs➞lithology
- liver_disord - History of liver disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, liver disease (https://disease-ontology.org/?id=DOID:409).
  - human-gut➞liver_disord
- local_class - Soil classification based on local soil classification system
  - soil➞local_class
- local_class_meth - Reference or method used in determining the local soil classification
  - soil➞local_class_meth
- magnesium - Concentration of magnesium in the sample
  - hydrocarbon resources-cores➞magnesium
  - hydrocarbon resources-fluids_swabs➞magnesium
  - microbial mat_biofilm➞magnesium
  - sediment➞magnesium
  - water➞magnesium
- maternal_health_stat - Specification of the maternal health status
  - human-associated➞maternal_health_stat
- max_occup - The maximum amount of people allowed in the indoor environment
  - built environment➞max_occup
- mean_frict_vel - Measurement of mean friction velocity
  - microbial mat_biofilm➞mean_frict_vel
  - sediment➞mean_frict_vel
  - water➞mean_frict_vel
- mean_peak_frict_vel - Measurement of mean peak friction velocity
  - microbial mat_biofilm➞mean_peak_frict_vel
  - sediment➞mean_peak_frict_vel
  - water➞mean_peak_frict_vel
- mech_struc - mechanical structure: a moving structure
  - built environment➞mech_struc
- mechanical_damage - Information about any mechanical damage exerted on the plant; can include multiple damages and sites
  - plant-associated➞mechanical_damage
- medic_hist_perform - Whether full medical history was collected
  - human-associated➞medic_hist_perform
  - human-gut➞medic_hist_perform
  - human-oral➞medic_hist_perform
  - human-skin➞medic_hist_perform
  - human-vaginal➞medic_hist_perform
- menarche - Date of most recent menstruation
  - human-vaginal➞menarche
- menopause - Date of onset of menopause
  - human-vaginal➞menopause
- methane - Methane (gas) amount or concentration at the time of sampling
  - air➞methane
  - microbial mat_biofilm➞methane
  - sediment➞methane
- micro_biomass_meth - Reference or method used in determining microbial biomass
  - soil➞micro_biomass_meth
- microbial_biomass - The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units
  - soil➞microbial_biomass
- mineral_nutr_regm - Information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple mineral nutrient regimens
  - plant-associated➞mineral_nutr_regm
- misc_param - Any other measurement performed or parameter collected, that is not listed here
  - air➞misc_param
  - host-associated➞misc_param
  - human-associated➞misc_param
  - human-gut➞misc_param
  - human-oral➞misc_param
  - human-skin➞misc_param
  - human-vaginal➞misc_param
  - hydrocarbon resources-cores➞misc_param
  - hydrocarbon resources-fluids_swabs➞misc_param
  - microbial mat_biofilm➞misc_param
  - miscellaneous natural or artificial environment➞misc_param
  - plant-associated➞misc_param
  - sediment➞misc_param
  - soil➞misc_param
  - wastewater_sludge➞misc_param
  - water➞misc_param
- n_alkanes - Concentration of n-alkanes; can include multiple n-alkanes
  - microbial mat_biofilm➞n_alkanes
  - sediment➞n_alkanes
  - water➞n_alkanes
- nitrate - Concentration of nitrate in the sample
  - hydrocarbon resources-cores➞nitrate
  - hydrocarbon resources-fluids_swabs➞nitrate
  - microbial mat_biofilm➞nitrate
  - miscellaneous natural or artificial environment➞nitrate
  - sediment➞nitrate
  - wastewater_sludge➞nitrate
  - water➞nitrate
- nitrite - Concentration of nitrite in the sample
  - hydrocarbon resources-cores➞nitrite
  - hydrocarbon resources-fluids_swabs➞nitrite
  - microbial mat_biofilm➞nitrite
  - miscellaneous natural or artificial environment➞nitrite
  - sediment➞nitrite
  - water➞nitrite
- nitro - Concentration of nitrogen (total)
  - microbial mat_biofilm➞nitro
  - miscellaneous natural or artificial environment➞nitro
  - sediment➞nitro
  - water➞nitro
- non_min_nutr_regm - Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens
  - plant-associated➞non_min_nutr_regm
- nose_throat_disord - History of nose-throat disorders; can include multiple disorders, The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974).
  - human-associated➞nose_throat_disord
  - human-oral➞nose_throat_disord
- number_pets - The number of pets residing in the sampled space
  - built environment➞number_pets
- number_plants - The number of plant(s) in the sampling space
  - built environment➞number_plants
- number_resident - The number of individuals currently occupying in the sampling location
  - built environment➞number_resident
- occup_density_samp - Average number of occupants at time of sampling per square footage
  - built environment➞occup_density_samp
- occup_document - The type of documentation of occupancy
  - built environment➞occup_document
- occup_samp - Number of occupants present at time of sample within the given space
  - built environment➞occup_samp
- org_carb - Concentration of organic carbon
  - microbial mat_biofilm➞org_carb
  - miscellaneous natural or artificial environment➞org_carb
  - sediment➞org_carb
  - water➞org_carb
- org_count_qpcr_info - If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)
  - hydrocarbon resources-cores➞org_count_qpcr_info
  - hydrocarbon resources-fluids_swabs➞org_count_qpcr_info
- org_matter - Concentration of organic matter
  - microbial mat_biofilm➞org_matter
  - miscellaneous natural or artificial environment➞org_matter
  - sediment➞org_matter
  - water➞org_matter
- org_nitro - Concentration of organic nitrogen
  - microbial mat_biofilm➞org_nitro
  - miscellaneous natural or artificial environment➞org_nitro
  - sediment➞org_nitro
  - water➞org_nitro
- org_particles - Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc.
  - wastewater_sludge➞org_particles
- organism_count - Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)
  - air➞organism_count
  - built environment➞organism_count
  - host-associated➞organism_count
  - human-associated➞organism_count
  - human-gut➞organism_count
  - human-oral➞organism_count
  - human-skin➞organism_count
  - human-vaginal➞organism_count
  - hydrocarbon resources-cores➞organism_count
  - hydrocarbon resources-fluids_swabs➞organism_count
  - microbial mat_biofilm➞organism_count
  - miscellaneous natural or artificial environment➞organism_count
  - plant-associated➞organism_count
  - sediment➞organism_count
  - wastewater_sludge➞organism_count
  - water➞organism_count
- owc_tvdss - Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
  - hydrocarbon resources-cores➞owc_tvdss
- oxy_stat_samp - Oxygenation status of sample
  - air➞oxy_stat_samp
  - host-associated➞oxy_stat_samp
  - human-associated➞oxy_stat_samp
  - human-gut➞oxy_stat_samp
  - human-oral➞oxy_stat_samp
  - human-skin➞oxy_stat_samp
  - human-vaginal➞oxy_stat_samp
  - hydrocarbon resources-cores➞oxy_stat_samp
  - hydrocarbon resources-fluids_swabs➞oxy_stat_samp
  - microbial mat_biofilm➞oxy_stat_samp
  - miscellaneous natural or artificial environment➞oxy_stat_samp
  - plant-associated➞oxy_stat_samp
  - sediment➞oxy_stat_samp
  - wastewater_sludge➞oxy_stat_samp
  - water➞oxy_stat_samp
- oxygen - Oxygen (gas) amount or concentration at the time of sampling
  - air➞oxygen
- part_org_carb - Concentration of particulate organic carbon
  - microbial mat_biofilm➞part_org_carb
  - sediment➞part_org_carb
  - water➞part_org_carb
- part_org_nitro - Concentration of particulate organic nitrogen
  - water➞part_org_nitro
- particle_class - Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values
  - sediment➞particle_class
- permeability - Measure of the ability of a hydrocarbon resource to allow fluids to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))
  - hydrocarbon resources-cores➞permeability
- perturbation - Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types
  - air➞perturbation
  - host-associated➞perturbation
  - human-associated➞perturbation
  - human-gut➞perturbation
  - human-oral➞perturbation
  - human-skin➞perturbation
  - human-vaginal➞perturbation
  - microbial mat_biofilm➞perturbation
  - miscellaneous natural or artificial environment➞perturbation
  - plant-associated➞perturbation
  - sediment➞perturbation
  - wastewater_sludge➞perturbation
  - water➞perturbation
- pesticide_regm - Information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple pesticide regimens
  - plant-associated➞pesticide_regm
- pet_farm_animal - Specification of presence of pets or farm animals in the environment of subject, if yes the animals should be specified; can include multiple animals present
  - human-associated➞pet_farm_animal
- petroleum_hydrocarb - Concentration of petroleum hydrocarbon
  - microbial mat_biofilm➞petroleum_hydrocarb
  - sediment➞petroleum_hydrocarb
  - water➞petroleum_hydrocarb
- ph - Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid
  - hydrocarbon resources-cores➞ph
  - hydrocarbon resources-fluids_swabs➞ph
  - microbial mat_biofilm➞ph
  - miscellaneous natural or artificial environment➞ph
  - sediment➞ph
  - soil➞ph
  - wastewater_sludge➞ph
  - water➞ph
- ph_meth - Reference or method used in determining ph
  - soil➞ph_meth
- ph_regm - Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen
  - plant-associated➞ph_regm
- phaeopigments - Concentration of phaeopigments; can include multiple phaeopigments
  - microbial mat_biofilm➞phaeopigments
  - sediment➞phaeopigments
  - water➞phaeopigments
- phosphate - Concentration of phosphate
  - microbial mat_biofilm➞phosphate
  - miscellaneous natural or artificial environment➞phosphate
  - sediment➞phosphate
  - wastewater_sludge➞phosphate
  - water➞phosphate
- phosplipid_fatt_acid - Concentration of phospholipid fatty acids; can include multiple values
  - microbial mat_biofilm➞phosplipid_fatt_acid
  - miscellaneous natural or artificial environment➞phosplipid_fatt_acid
  - sediment➞phosplipid_fatt_acid
  - water➞phosplipid_fatt_acid
- photon_flux - Measurement of photon flux
  - water➞photon_flux
- plant_growth_med - Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary
  - plant-associated➞plant_growth_med
- plant_product - Substance produced by the plant, where the sample was obtained from
  - plant-associated➞plant_product
- plant_sex - Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite.
  - plant-associated➞plant_sex
- plant_struc - Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here.
  - plant-associated➞plant_struc
- pollutants - Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant
  - air➞pollutants
- pool_dna_extracts - Indicate whether multiple DNA extractions were mixed. If the answer yes, the number of extracts that were pooled should be given
  - soil➞pool_dna_extracts
- porosity - Porosity of deposited sediment is volume of voids divided by the total volume of sample
  - hydrocarbon resources-cores➞porosity
  - sediment➞porosity
- potassium - Concentration of potassium in the sample
  - hydrocarbon resources-cores➞potassium
  - hydrocarbon resources-fluids_swabs➞potassium
  - microbial mat_biofilm➞potassium
  - miscellaneous natural or artificial environment➞potassium
  - sediment➞potassium
  - water➞potassium
- pour_point - Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)
  - hydrocarbon resources-cores➞pour_point
  - hydrocarbon resources-fluids_swabs➞pour_point
- pre_treatment - The process of pre-treatment removes materials that can be easily collected from the raw wastewater
  - wastewater_sludge➞pre_treatment
- pregnancy - Date due of pregnancy
  - human-vaginal➞pregnancy
- pres_animal_insect - The type and number of animals or insects present in the sampling space.
  - built environment➞pres_animal_insect
- pressure - Pressure to which the sample is subject to, in atmospheres
  - hydrocarbon resources-cores➞pressure
  - hydrocarbon resources-fluids_swabs➞pressure
  - microbial mat_biofilm➞pressure
  - miscellaneous natural or artificial environment➞pressure
  - sediment➞pressure
  - water➞pressure
- prev_land_use_meth - Reference or method used in determining previous land use and dates
  - soil➞prev_land_use_meth
- previous_land_use - Previous land use and dates
  - soil➞previous_land_use
- primary_prod - Measurement of primary production, generally measured as isotope uptake
  - water➞primary_prod
- primary_treatment - The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed
  - wastewater_sludge➞primary_treatment
- prod_rate - Oil and/or gas production rates per well (e.g. 524 m3 / day)
  - hydrocarbon resources-fluids_swabs➞prod_rate
- prod_start_date - Date of field's first production
  - hydrocarbon resources-fluids_swabs➞prod_start_date
- profile_position - Cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas
  - soil➞profile_position
- pulmonary_disord - History of pulmonary disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, lung disease (https://disease-ontology.org/?id=DOID:850).
  - human-associated➞pulmonary_disord
- quad_pos - The quadrant position of the sampling room within the building
  - built environment➞quad_pos
- radiation_regm - Information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple radiation regimens
  - plant-associated➞radiation_regm
- rainfall_regm - Information about treatment involving an exposure to a given amount of rainfall, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞rainfall_regm
- reactor_type - Anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage
  - wastewater_sludge➞reactor_type
- redox_potential - Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential
  - microbial mat_biofilm➞redox_potential
  - sediment➞redox_potential
  - water➞redox_potential
- rel_air_humidity - Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air
  - built environment➞rel_air_humidity
- rel_humidity_out - The recorded outside relative humidity value at the time of sampling
  - built environment➞rel_humidity_out
- rel_samp_loc - The sampling location within the train car
  - built environment➞rel_samp_loc
- reservoir - Name of the reservoir (e.g. Carapebus)
  - hydrocarbon resources-cores➞reservoir
  - hydrocarbon resources-fluids_swabs➞reservoir
- resins_pc - Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)
  - hydrocarbon resources-cores➞resins_pc
  - hydrocarbon resources-fluids_swabs➞resins_pc
- resp_part_matter - Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM
  - air➞resp_part_matter
- room_air_exch_rate - The rate at which outside air replaces indoor air in a given space
  - built environment➞room_air_exch_rate
- room_architec_elem - The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure
  - built environment➞room_architec_elem
- room_condt - The condition of the room at the time of sampling
  - built environment➞room_condt
- room_connected - List of rooms connected to the sampling room by a doorway
  - built environment➞room_connected
- room_count - The total count of rooms in the built structure including all room types
  - built environment➞room_count
- room_dim - The length, width and height of sampling room
  - built environment➞room_dim
- room_door_dist - Distance between doors (meters) in the hallway between the sampling room and adjacent rooms
  - built environment➞room_door_dist
- room_door_share - List of room(s) (room number, room name) sharing a door with the sampling room
  - built environment➞room_door_share
- room_hallway - List of room(s) (room number, room name) located in the same hallway as sampling room
  - built environment➞room_hallway
- room_loc - The position of the room within the building
  - built environment➞room_loc
- room_moist_dam_hist - The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed
  - built environment➞room_moist_dam_hist
- room_net_area - The net floor area of sampling room. Net area excludes wall thicknesses
  - built environment➞room_net_area
- room_occup - Count of room occupancy at time of sampling
  - built environment➞room_occup
- room_samp_pos - The horizontal sampling position in the room relative to architectural elements
  - built environment➞room_samp_pos
- room_type - The main purpose or activity of the sampling room. A room is any distinguishable space within a structure
  - built environment➞room_type
- room_vol - Volume of sampling room
  - built environment➞room_vol
- room_wall_share - List of room(s) (room number, room name) sharing a wall with the sampling room
  - built environment➞room_wall_share
- room_window_count - Number of windows in the room
  - built environment➞room_window_count
- root_cond - Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container.
  - plant-associated➞root_cond
- root_med_carbon - Source of organic carbon in the culture rooting medium; e.g. sucrose.
  - plant-associated➞root_med_carbon
- root_med_macronutr - Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L).
  - plant-associated➞root_med_macronutr
- root_med_micronutr - Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L).
  - plant-associated➞root_med_micronutr
- root_med_ph - pH measurement of the culture rooting medium; e.g. 5.5.
  - plant-associated➞root_med_ph
- root_med_regl - Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA.
  - plant-associated➞root_med_regl
- root_med_solid - Specification of the solidifying agent in the culture rooting medium; e.g. agar.
  - plant-associated➞root_med_solid
- root_med_suppl - Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5¬†mg/L).
  - plant-associated➞root_med_suppl
- salinity - The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater.
  - air➞salinity
  - host-associated➞salinity
  - human-associated➞salinity
  - human-gut➞salinity
  - human-oral➞salinity
  - human-skin➞salinity
  - human-vaginal➞salinity
  - hydrocarbon resources-cores➞salinity
  - hydrocarbon resources-fluids_swabs➞salinity
  - microbial mat_biofilm➞salinity
  - miscellaneous natural or artificial environment➞salinity
  - plant-associated➞salinity
  - sediment➞salinity
  - wastewater_sludge➞salinity
  - water➞salinity
- salinity_meth - Reference or method used in determining salinity
  - soil➞salinity_meth
- salt_regm - Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens
  - plant-associated➞salt_regm
- samp_capt_status - Reason for the sample
  - host-associated➞samp_capt_status
  - plant-associated➞samp_capt_status
- samp_collect_point - Sampling point on the asset were sample was collected (e.g. Wellhead, storage tank, separator, etc). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-fluids_swabs➞samp_collect_point
- samp_dis_stage - Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen.
  - host-associated➞samp_dis_stage
  - plant-associated➞samp_dis_stage
- samp_floor - The floor of the building, where the sampling room is located
  - built environment➞samp_floor
- samp_loc_corr_rate - Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays
  - hydrocarbon resources-fluids_swabs➞samp_loc_corr_rate
- samp_md - In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞samp_md
- samp_preserv - Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)
  - hydrocarbon resources-fluids_swabs➞samp_preserv
- samp_room_id - Sampling room number. This ID should be consistent with the designations on the building floor plans
  - built environment➞samp_room_id
- samp_salinity - Salinity is the total concentration of all dissolved salts in a liquid or solid (in the form of an extract obtained by centrifugation) sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater
  - air➞samp_salinity
  - host-associated➞samp_salinity
  - human-associated➞samp_salinity
  - human-gut➞samp_salinity
  - human-oral➞samp_salinity
  - human-skin➞samp_salinity
  - human-vaginal➞samp_salinity
  - hydrocarbon resources-cores➞samp_salinity
  - hydrocarbon resources-fluids_swabs➞samp_salinity
  - plant-associated➞samp_salinity
  - wastewater_sludge➞samp_salinity
- samp_sort_meth - Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor.
  - built environment➞samp_sort_meth
- samp_store_dur - Duration for which the sample was stored
  - air➞samp_store_dur
  - host-associated➞samp_store_dur
  - human-associated➞samp_store_dur
  - human-gut➞samp_store_dur
  - human-oral➞samp_store_dur
  - human-skin➞samp_store_dur
  - human-vaginal➞samp_store_dur
  - hydrocarbon resources-cores➞samp_store_dur
  - hydrocarbon resources-fluids_swabs➞samp_store_dur
  - microbial mat_biofilm➞samp_store_dur
  - miscellaneous natural or artificial environment➞samp_store_dur
  - plant-associated➞samp_store_dur
  - sediment➞samp_store_dur
  - wastewater_sludge➞samp_store_dur
  - water➞samp_store_dur
- samp_store_loc - Location at which sample was stored, usually name of a specific freezer/room
  - air➞samp_store_loc
  - host-associated➞samp_store_loc
  - human-associated➞samp_store_loc
  - human-gut➞samp_store_loc
  - human-oral➞samp_store_loc
  - human-skin➞samp_store_loc
  - human-vaginal➞samp_store_loc
  - hydrocarbon resources-cores➞samp_store_loc
  - hydrocarbon resources-fluids_swabs➞samp_store_loc
  - microbial mat_biofilm➞samp_store_loc
  - miscellaneous natural or artificial environment➞samp_store_loc
  - plant-associated➞samp_store_loc
  - sediment➞samp_store_loc
  - wastewater_sludge➞samp_store_loc
  - water➞samp_store_loc
- samp_store_temp - Temperature at which sample was stored, e.g. -80 degree Celsius
  - air➞samp_store_temp
  - host-associated➞samp_store_temp
  - human-associated➞samp_store_temp
  - human-gut➞samp_store_temp
  - human-oral➞samp_store_temp
  - human-skin➞samp_store_temp
  - human-vaginal➞samp_store_temp
  - hydrocarbon resources-cores➞samp_store_temp
  - hydrocarbon resources-fluids_swabs➞samp_store_temp
  - microbial mat_biofilm➞samp_store_temp
  - miscellaneous natural or artificial environment➞samp_store_temp
  - plant-associated➞samp_store_temp
  - sediment➞samp_store_temp
  - wastewater_sludge➞samp_store_temp
  - water➞samp_store_temp
- samp_subtype - Name of sample sub-type. For example if "sample type" is "Produced Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞samp_subtype
  - hydrocarbon resources-fluids_swabs➞samp_subtype
- samp_time_out - The recent and long term history of outside sampling
  - built environment➞samp_time_out
- samp_transport_cond - Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 ¬∞C)
  - hydrocarbon resources-cores➞samp_transport_cond
  - hydrocarbon resources-fluids_swabs➞samp_transport_cond
- samp_tvdss - Depth of the sample i.e. The vertical distance between the sea level and the sampled position in the subsurface. Depth can be reported as an interval for subsurface samples e.g. 1325.75-1362.25 m
  - hydrocarbon resources-cores➞samp_tvdss
- samp_type - The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246).
  - hydrocarbon resources-cores➞samp_type
  - hydrocarbon resources-fluids_swabs➞samp_type
- samp_weather - The weather on the sampling day
  - built environment➞samp_weather
- samp_well_name - Name of the well (e.g. BXA1123) where sample was taken
  - hydrocarbon resources-cores➞samp_well_name
  - hydrocarbon resources-fluids_swabs➞samp_well_name
- saturates_pc - Saturate, Aromatic, Resin and Asphaltene¬†(SARA) is an analysis method that divides¬†crude oil¬†components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)
  - hydrocarbon resources-cores➞saturates_pc
  - hydrocarbon resources-fluids_swabs➞saturates_pc
- season - The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
  - built environment➞season
- season_environment - Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment
  - plant-associated➞season_environment
- season_precpt - The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps.
  - soil➞season_precpt
- season_temp - Mean seasonal temperature
  - soil➞season_temp
- season_use - The seasons the space is occupied
  - built environment➞season_use
- secondary_treatment - The process for substantially degrading the biological content of the sewage
  - wastewater_sludge➞secondary_treatment
- sediment_type - Information about the sediment type based on major constituents
  - sediment➞sediment_type
- sewage_type - Type of wastewater treatment plant as municipial or industrial
  - wastewater_sludge➞sewage_type
- sexual_act - Current sexual partner and frequency of sex
  - human-vaginal➞sexual_act
- shad_dev_water_mold - Signs of the presence of mold or mildew on the shading device
  - built environment➞shad_dev_water_mold
- shading_device_cond - The physical condition of the shading device at the time of sampling
  - built environment➞shading_device_cond
- shading_device_loc - The location of the shading device in relation to the built structure
  - built environment➞shading_device_loc
- shading_device_mat - The material the shading device is composed of
  - built environment➞shading_device_mat
- shading_device_type - The type of shading device
  - built environment➞shading_device_type
- sieving - Collection design of pooled samples and/or sieve size and amount of sample sieved
  - soil➞sieving
- silicate - Concentration of silicate
  - microbial mat_biofilm➞silicate
  - miscellaneous natural or artificial environment➞silicate
  - sediment➞silicate
  - water➞silicate
- size_frac_low - Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample
  - water➞size_frac_low
- size_frac_up - Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample
  - water➞size_frac_up
- slope_aspect - The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., nw or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.
  - soil➞slope_aspect
- slope_gradient - Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer
  - soil➞slope_gradient
- sludge_retent_time - The time activated sludge remains in reactor
  - wastewater_sludge➞sludge_retent_time
- smoker - Specification of smoking status
  - human-associated➞smoker
- sodium - Sodium concentration in the sample
  - hydrocarbon resources-cores➞sodium
  - hydrocarbon resources-fluids_swabs➞sodium
  - microbial mat_biofilm➞sodium
  - miscellaneous natural or artificial environment➞sodium
  - sediment➞sodium
  - wastewater_sludge➞sodium
  - water➞sodium
- soil_type - Soil series name or other lower-level classification
  - soil➞soil_type
- soil_type_meth - Reference or method used in determining soil series name or other lower-level classification
  - soil➞soil_type_meth
- solar_irradiance - The amount of solar energy that arrives at a specific area of a surface during a specific time interval
  - air➞solar_irradiance
- soluble_inorg_mat - Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc.
  - wastewater_sludge➞soluble_inorg_mat
- soluble_org_mat - Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc.
  - wastewater_sludge➞soluble_org_mat
- soluble_react_phosp - Concentration of soluble reactive phosphorus
  - water➞soluble_react_phosp
- space_typ_state - Customary or normal state of the space
  - built environment➞space_typ_state
- special_diet - Specification of special diet; can include multiple special diets
  - human-gut➞special_diet
- specific - The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents
  - built environment➞specific
- specific_humidity - The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound.
  - built environment➞specific_humidity
- sr_dep_env - Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞sr_dep_env
- sr_geol_age - Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞sr_geol_age
- sr_kerog_type - Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/ fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞sr_kerog_type
- sr_lithology - Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock). If "other" is specified, please propose entry in "additional info" field
  - hydrocarbon resources-cores➞sr_lithology
- standing_water_regm - Treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞standing_water_regm
- store_cond - Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other).
  - soil➞store_cond
- study_complt_stat - Specification of study completion status, if no the reason should be specified
  - human-associated➞study_complt_stat
- substructure_type - The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level
  - built environment➞substructure_type
- sulfate - Concentration of sulfate in the sample
  - hydrocarbon resources-cores➞sulfate
  - hydrocarbon resources-fluids_swabs➞sulfate
  - microbial mat_biofilm➞sulfate
  - miscellaneous natural or artificial environment➞sulfate
  - sediment➞sulfate
  - water➞sulfate
- sulfate_fw - Original sulfate concentration in the hydrocarbon resource
  - hydrocarbon resources-cores➞sulfate_fw
  - hydrocarbon resources-fluids_swabs➞sulfate_fw
- sulfide - Concentration of sulfide in the sample
  - hydrocarbon resources-cores➞sulfide
  - hydrocarbon resources-fluids_swabs➞sulfide
  - microbial mat_biofilm➞sulfide
  - miscellaneous natural or artificial environment➞sulfide
  - sediment➞sulfide
  - water➞sulfide
- surf_air_cont - Contaminant identified on surface
  - built environment➞surf_air_cont
- surf_humidity - Surfaces: water activity as a function of air and material moisture
  - built environment➞surf_humidity
- surf_material - Surface materials at the point of sampling
  - built environment➞surf_material
- surf_moisture - Water held on a surface
  - built environment➞surf_moisture
- surf_moisture_ph - ph measurement of surface
  - built environment➞surf_moisture_ph
- surf_temp - Temperature of the surface at the time of sampling
  - built environment➞surf_temp
- suspend_part_matter - Concentration of suspended particulate matter
  - water➞suspend_part_matter
- suspend_solids - Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances
  - hydrocarbon resources-cores➞suspend_solids
  - hydrocarbon resources-fluids_swabs➞suspend_solids
  - wastewater_sludge➞suspend_solids
- tan - Total Acid Number¬†(TAN) is a measurement of acidity that is determined by the amount of¬†potassium hydroxide¬†in milligrams that is needed to neutralize the acids in one gram of oil.¬†It is an important quality measurement of¬†crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)
  - hydrocarbon resources-cores➞tan
  - hydrocarbon resources-fluids_swabs➞tan
- temp_out - The recorded temperature value at sampling time outside
  - built environment➞temp_out
- tertiary_treatment - The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment
  - wastewater_sludge➞tertiary_treatment
- texture - The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional.
  - soil➞texture
- texture_meth - Reference or method used in determining soil texture
  - soil➞texture_meth
- tidal_stage - Stage of tide
  - sediment➞tidal_stage
  - water➞tidal_stage
- tillage - Note method(s) used for tilling
  - soil➞tillage
- time_last_toothbrush - Specification of the time since last toothbrushing
  - human-oral➞time_last_toothbrush
- time_since_last_wash - Specification of the time since last wash
  - human-skin➞time_since_last_wash
- tiss_cult_growth_med - Description of plant tissue culture growth media used
  - plant-associated➞tiss_cult_growth_med
- toluene - Concentration of toluene in the sample
  - hydrocarbon resources-cores➞toluene
  - hydrocarbon resources-fluids_swabs➞toluene
- tot_carb - Total carbon content
  - microbial mat_biofilm➞tot_carb
  - sediment➞tot_carb
- tot_depth_water_col - Measurement of total depth of water column
  - sediment➞tot_depth_water_col
  - water➞tot_depth_water_col
- tot_diss_nitro - Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen
  - water➞tot_diss_nitro
- tot_inorg_nitro - Total inorganic nitrogen content
  - water➞tot_inorg_nitro
- tot_iron - Concentration of total iron in the sample
  - hydrocarbon resources-cores➞tot_iron
  - hydrocarbon resources-fluids_swabs➞tot_iron
- tot_nitro - Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen
  - hydrocarbon resources-cores➞tot_nitro
  - hydrocarbon resources-fluids_swabs➞tot_nitro
  - wastewater_sludge➞tot_nitro
  - water➞tot_nitro
- tot_nitro_cont_meth - Reference or method used in determining the total nitrogen
  - soil➞tot_nitro_cont_meth
- tot_nitro_content - Total nitrogen content of the sample
  - microbial mat_biofilm➞tot_nitro_content
  - sediment➞tot_nitro_content
  - soil➞tot_nitro_content
- tot_org_c_meth - Reference or method used in determining total organic carbon
  - soil➞tot_org_c_meth
- tot_org_carb - Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content
  - microbial mat_biofilm➞tot_org_carb
  - sediment➞tot_org_carb
  - soil➞tot_org_carb
- tot_part_carb - Total particulate carbon content
  - water➞tot_part_carb
- tot_phosp - Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus
  - hydrocarbon resources-cores➞tot_phosp
  - hydrocarbon resources-fluids_swabs➞tot_phosp
  - water➞tot_phosp
- tot_phosphate - Total amount or concentration of phosphate
  - wastewater_sludge➞tot_phosphate
- tot_sulfur - Concentration of total sulfur in the sample
  - hydrocarbon resources-cores➞tot_sulfur
  - hydrocarbon resources-fluids_swabs➞tot_sulfur
- train_line - The subway line name
  - built environment➞train_line
- train_stat_loc - The train station collection location
  - built environment➞train_stat_loc
- train_stop_loc - The train stop collection location
  - built environment➞train_stop_loc
- travel_out_six_month - Specification of the countries travelled in the last six months; can include multiple travels
  - human-associated➞travel_out_six_month
- turbidity - Measure of the amount of cloudiness or haziness in water caused by individual particles
  - microbial mat_biofilm➞turbidity
  - sediment➞turbidity
  - water➞turbidity
- tvdss_of_hcr_press - True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m).
  - hydrocarbon resources-cores➞tvdss_of_hcr_press
  - hydrocarbon resources-fluids_swabs➞tvdss_of_hcr_press
- tvdss_of_hcr_temp - True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m).
  - hydrocarbon resources-cores➞tvdss_of_hcr_temp
  - hydrocarbon resources-fluids_swabs➞tvdss_of_hcr_temp
- twin_sibling - Specification of twin sibling presence
  - human-associated➞twin_sibling
- typ_occup_density - Customary or normal density of occupants
  - built environment➞typ_occup_density
- urine_collect_meth - Specification of urine collection method
  - human-associated➞urine_collect_meth
- urogenit_disord - History of urogenital disorders, can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary system disease (https://disease-ontology.org/?id=DOID:18).
  - human-vaginal➞urogenit_disord
- urogenit_tract_disor - History of urogenital tract disorders; can include multiple disorders. The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org, urinary system disease (https://disease-ontology.org/?id=DOID:18).
  - human-associated➞urogenit_tract_disor
- ventilation_rate - Ventilation rate of the system in the sampled premises
  - air➞ventilation_rate
- ventilation_type - Ventilation system used in the sampled premises
  - air➞ventilation_type
  - built environment➞ventilation_type
- vfa - Concentration of Volatile Fatty Acids in the sample
  - hydrocarbon resources-cores➞vfa
  - hydrocarbon resources-fluids_swabs➞vfa
- vfa_fw - Original volatile fatty acid concentration in the hydrocarbon resource
  - hydrocarbon resources-cores➞vfa_fw
  - hydrocarbon resources-fluids_swabs➞vfa_fw
- vis_media - The building visual media
  - built environment➞vis_media
- viscosity - A measure of oil's resistance¬†to gradual deformation by¬†shear stress¬†or¬†tensile stress (e.g. 3.5 cp; 100 ¬∞C)
  - hydrocarbon resources-cores➞viscosity
  - hydrocarbon resources-fluids_swabs➞viscosity
- volatile_org_comp - Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound
  - air➞volatile_org_comp
- wall_area - The total area of the sampled room's walls
  - built environment➞wall_area
- wall_const_type - The building class of the wall defined by the composition of the building elements and fire-resistance rating.
  - built environment➞wall_const_type
- wall_finish_mat - The material utilized to finish the outer most layer of the wall
  - built environment➞wall_finish_mat
- wall_height - The average height of the walls in the sampled room
  - built environment➞wall_height
- wall_loc - The relative location of the wall within the room
  - built environment➞wall_loc
- wall_surf_treatment - The surface treatment of interior wall
  - built environment➞wall_surf_treatment
- wall_texture - The feel, appearance, or consistency of a wall surface
  - built environment➞wall_texture
- wall_thermal_mass - The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint
  - built environment➞wall_thermal_mass
- wall_water_mold - Signs of the presence of mold or mildew on a wall
  - built environment➞wall_water_mold
- wastewater_type - The origin of wastewater such as human waste, rainfall, storm drains, etc.
  - wastewater_sludge➞wastewater_type
- water_cont_soil_meth - Reference or method used in determining the water content of soil
  - soil➞water_cont_soil_meth
- water_content - Water content measurement
  - microbial mat_biofilm➞water_content
  - sediment➞water_content
  - soil➞water_content
- water_current - Measurement of magnitude and direction of flow within a fluid
  - miscellaneous natural or artificial environment➞water_current
  - water➞water_current
- water_cut - Current amount of water (%) in a produced fluid stream; or the average of the combined streams
  - hydrocarbon resources-fluids_swabs➞water_cut
- water_feat_size - The size of the water feature
  - built environment➞water_feat_size
- water_feat_type - The type of water feature present within the building being sampled
  - built environment➞water_feat_type
- water_prod_rate - Water production rates per well (e.g. 987 m3 / day)
  - hydrocarbon resources-fluids_swabs➞water_prod_rate
- water_temp_regm - Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞water_temp_regm
- watering_regm - Information about treatment involving an exposure to watering frequencies, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens
  - plant-associated➞watering_regm
- weekday - The day of the week when sampling occurred
  - built environment➞weekday
- weight_loss_3_month - Specification of weight loss in the last three months, if yes should be further specified to include amount of weight loss
  - human-associated➞weight_loss_3_month
- win - A unique identifier of a well or wellbore. This is part of the Global Framework for Well Identification initiative which is compiled by the Professional Petroleum Data Management Association (PPDM) in an effort to improve well identification systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)
  - hydrocarbon resources-cores➞win
  - hydrocarbon resources-fluids_swabs➞win
- wind_direction - Wind direction is the direction from which a wind originates
  - air➞wind_direction
- wind_speed - Speed of wind measured at the time of sampling
  - air➞wind_speed
- window_cond - The physical condition of the window at the time of sampling
  - built environment➞window_cond
- window_cover - The type of window covering
  - built environment➞window_cover
- window_horiz_pos - The horizontal position of the window on the wall
  - built environment➞window_horiz_pos
- window_loc - The relative location of the window within the room
  - built environment➞window_loc
- window_mat - The type of material used to finish a window
  - built environment➞window_mat
- window_open_freq - The number of times windows are opened per week
  - built environment➞window_open_freq
- window_size - The window's length and width
  - built environment➞window_size
- window_status - Defines whether the windows were open or closed during environmental testing
  - built environment➞window_status
- window_type - The type of windows
  - built environment➞window_type
- window_vert_pos - The vertical position of the window on the wall
  - built environment➞window_vert_pos
- window_water_mold - Signs of the presence of mold or mildew on the window.
  - built environment➞window_water_mold
- xylene - Concentration of xylene in the sample
  - hydrocarbon resources-cores➞xylene
  - hydrocarbon resources-fluids_swabs➞xylene
environment field - field describing environmental aspect of a sample
- alt - Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air
- collection_date - The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant
- depth - The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
- elev - Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit.
- env_broad_scale - Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
- env_local_scale - Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
- env_medium - Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top).
- geo_loc_name - The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)
- lat_lon - The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
- temp - Temperature of the sample at the time of sampling.
investigation field - field describing aspect of the investigation/study to which the sample belongs
- experimental_factor - Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
- investigation_type - Nucleic Acid Sequence Report is the root element of all MIGS/MIMS compliant reports as standardized by Genomic Standards Consortium. This field is either eukaryote,bacteria,virus,plasmid,organelle, metagenome,mimarks-survey, mimarks-specimen, metatranscriptome, single amplified genome, metagenome-assembled genome, or uncultivated viral genome
- project_name - Name of the project within which the sequencing was organized
- samp_name - A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.
- samp_taxon_id - NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls.
- submitted_to_insdc - Depending on the study (large-scale e.g. done with next generation sequencing technology, or small-scale) sequences have to be submitted to SRA (Sequence Read Archive), DRA (DDBJ Read Archive) or via the classical Webin/Sequin systems to Genbank, ENA and DDBJ. Although this field is mandatory, it is meant as a self-test field, therefore it is not necessary to include this field in contextual data submitted to databases
mixs extension field
- env_package - MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported
nucleic acid sequence source field
- biotic_relationship - Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object
  - MIGS bacteria➞biotic_relationship
  - MIGS eukaryote➞biotic_relationship
  - MIGS virus➞biotic_relationship
  - MIMARKS survey➞biotic_relationship
  - MIUVIG➞biotic_relationship
- encoded_traits - Should include key traits like antibiotic resistance or xenobiotic degradation phenotypes for plasmids, converting genes for phage
  - MIGS bacteria➞encoded_traits
  - MIGS plant➞encoded_traits
  - MIGS virus➞encoded_traits
- estimated_size - The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period.
  - MIGS bacteria➞estimated_size
  - MIGS eukaryote➞estimated_size
  - MIGS org➞estimated_size
  - MIGS plant➞estimated_size
  - MIGS virus➞estimated_size
  - MIUVIG➞estimated_size
- extrachrom_elements - Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids (borrelia has 15+ plasmids)
  - MIGS bacteria➞extrachrom_elements
  - MIGS eukaryote➞extrachrom_elements
  - MIGS org➞extrachrom_elements
  - MIMARKS survey➞extrachrom_elements
- health_disease_stat - Health or disease status of specific host at time of collection
  - MIGS bacteria➞health_disease_stat
  - MIGS eukaryote➞health_disease_stat
  - MIGS virus➞health_disease_stat
- host_disease_stat - List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text
  - MIGS bacteria➞host_disease_stat
  - MIGS eukaryote➞host_disease_stat
  - MIGS virus➞host_disease_stat
  - MIUVIG➞host_disease_stat
  - host-associated➞host_disease_stat
  - human-associated➞host_disease_stat
  - human-gut➞host_disease_stat
  - human-oral➞host_disease_stat
  - human-skin➞host_disease_stat
  - human-vaginal➞host_disease_stat
  - plant-associated➞host_disease_stat
- host_spec_range - The range and diversity of host species that an organism is capable of infecting, defined by NCBI taxonomy identifier.
  - MIGS bacteria➞host_spec_range
  - MIGS eukaryote➞host_spec_range
  - MIGS plant➞host_spec_range
  - MIGS virus➞host_spec_range
  - MIUVIG➞host_spec_range
- isol_growth_condt - Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material
  - MIGS bacteria➞isol_growth_condt
  - MIGS eukaryote➞isol_growth_condt
  - MIGS org➞isol_growth_condt
  - MIGS plant➞isol_growth_condt
  - MIGS virus➞isol_growth_condt
  - MIMARKS survey➞isol_growth_condt
- num_replicons - Reports the number of replicons in a nuclear genome of eukaryotes, in the genome of a bacterium or archaea or the number of segments in a segmented virus. Always applied to the haploid chromosome count of a eukaryote
  - MIGS bacteria➞num_replicons
  - MIGS eukaryote➞num_replicons
  - MIGS virus➞num_replicons
- pathogenicity - To what is the entity pathogenic
  - MIGS bacteria➞pathogenicity
  - MIGS eukaryote➞pathogenicity
  - MIGS virus➞pathogenicity
  - MIUVIG➞pathogenicity
- ploidy - The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer to http://purl.bioontology.org/ontology/PATO
  - MIGS eukaryote➞ploidy
- propagation - The type of reproduction from the parent stock. Values for this field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual.
  - MIGS eukaryote➞propagation
  - MIGS plant➞propagation
  - MIGS virus➞propagation
- ref_biomaterial - Primary publication if isolated before genome publication; otherwise, primary genome report.
  - ME➞ref_biomaterial
  - MIGS bacteria➞ref_biomaterial
  - MIGS eukaryote➞ref_biomaterial
  - MIGS org➞ref_biomaterial
  - MIGS plant➞ref_biomaterial
  - MIGS virus➞ref_biomaterial
  - MIMAG➞ref_biomaterial
  - MISAG➞ref_biomaterial
  - MIUVIG➞ref_biomaterial
- rel_to_oxygen - Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments
  - ME➞rel_to_oxygen
  - MIGS bacteria➞rel_to_oxygen
  - MIMAG➞rel_to_oxygen
  - MIMARKS specimen➞rel_to_oxygen
  - MIMARKS survey➞rel_to_oxygen
  - MISAG➞rel_to_oxygen
- samp_collec_device - The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
  - ME➞samp_collec_device
  - MIGS bacteria➞samp_collec_device
  - MIGS eukaryote➞samp_collec_device
  - MIGS org➞samp_collec_device
  - MIGS plant➞samp_collec_device
  - MIGS virus➞samp_collec_device
  - MIMAG➞samp_collec_device
  - MIMARKS specimen➞samp_collec_device
  - MIMARKS survey➞samp_collec_device
  - MISAG➞samp_collec_device
  - MIUVIG➞samp_collec_device
- samp_collec_method - The method employed for collecting the sample.
  - ME➞samp_collec_method
  - MIGS bacteria➞samp_collec_method
  - MIGS eukaryote➞samp_collec_method
  - MIGS org➞samp_collec_method
  - MIGS plant➞samp_collec_method
  - MIGS virus➞samp_collec_method
  - MIMAG➞samp_collec_method
  - MIMARKS specimen➞samp_collec_method
  - MIMARKS survey➞samp_collec_method
  - MISAG➞samp_collec_method
  - MIUVIG➞samp_collec_method
- samp_mat_process - A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed.
  - ME➞samp_mat_process
  - MIGS bacteria➞samp_mat_process
  - MIGS eukaryote➞samp_mat_process
  - MIGS org➞samp_mat_process
  - MIGS plant➞samp_mat_process
  - MIGS virus➞samp_mat_process
  - MIMAG➞samp_mat_process
  - MIMARKS specimen➞samp_mat_process
  - MIMARKS survey➞samp_mat_process
  - MISAG➞samp_mat_process
  - MIUVIG➞samp_mat_process
- samp_size - The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected.
  - ME➞samp_size
  - MIGS bacteria➞samp_size
  - MIGS eukaryote➞samp_size
  - MIGS org➞samp_size
  - MIGS plant➞samp_size
  - MIGS virus➞samp_size
  - MIMAG➞samp_size
  - MIMARKS specimen➞samp_size
  - MIMARKS survey➞samp_size
  - MISAG➞samp_size
  - MIUVIG➞samp_size
- samp_vol_we_dna_ext - Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001).
  - ME➞samp_vol_we_dna_ext
  - MIGS bacteria➞samp_vol_we_dna_ext
  - MIGS eukaryote➞samp_vol_we_dna_ext
  - MIGS org➞samp_vol_we_dna_ext
  - MIGS plant➞samp_vol_we_dna_ext
  - MIGS virus➞samp_vol_we_dna_ext
  - MIMAG➞samp_vol_we_dna_ext
  - MIMARKS specimen➞samp_vol_we_dna_ext
  - MIMARKS survey➞samp_vol_we_dna_ext
  - MISAG➞samp_vol_we_dna_ext
  - MIUVIG➞samp_vol_we_dna_ext
  - air➞samp_vol_we_dna_ext
  - host-associated➞samp_vol_we_dna_ext
  - human-associated➞samp_vol_we_dna_ext
  - human-gut➞samp_vol_we_dna_ext
  - human-oral➞samp_vol_we_dna_ext
  - human-skin➞samp_vol_we_dna_ext
  - human-vaginal➞samp_vol_we_dna_ext
  - hydrocarbon resources-cores➞samp_vol_we_dna_ext
  - hydrocarbon resources-fluids_swabs➞samp_vol_we_dna_ext
  - microbial mat_biofilm➞samp_vol_we_dna_ext
  - miscellaneous natural or artificial environment➞samp_vol_we_dna_ext
  - plant-associated➞samp_vol_we_dna_ext
  - sediment➞samp_vol_we_dna_ext
  - soil➞samp_vol_we_dna_ext
  - wastewater_sludge➞samp_vol_we_dna_ext
  - water➞samp_vol_we_dna_ext
- size_frac - Filtering pore size used in sample preparation
  - ME➞size_frac
  - MIMAG➞size_frac
  - MIMARKS specimen➞size_frac
  - MISAG➞size_frac
  - MIUVIG➞size_frac
- source_mat_id - A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2).
  - ME➞source_mat_id
  - MIGS bacteria➞source_mat_id
  - MIGS eukaryote➞source_mat_id
  - MIGS org➞source_mat_id
  - MIGS plant➞source_mat_id
  - MIGS virus➞source_mat_id
  - MIMAG➞source_mat_id
  - MIMARKS specimen➞source_mat_id
  - MIMARKS survey➞source_mat_id
  - MISAG➞source_mat_id
  - MIUVIG➞source_mat_id
- source_uvig - Type of dataset from which the UViG was obtained
  - MIUVIG➞source_uvig
- specific_host - Report the host's taxonomic name and/or NCBI taxonomy ID.
  - MIGS bacteria➞specific_host
  - MIGS eukaryote➞specific_host
  - MIGS plant➞specific_host
  - MIGS virus➞specific_host
  - MIUVIG➞specific_host
- subspecf_gen_lin - Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.
  - MIGS bacteria➞subspecf_gen_lin
  - MIGS eukaryote➞subspecf_gen_lin
  - MIGS org➞subspecf_gen_lin
  - MIGS plant➞subspecf_gen_lin
  - MIGS virus➞subspecf_gen_lin
  - MIMARKS survey➞subspecf_gen_lin
- trophic_level - Trophic levels are the feeding position in a food chain. Microbes can be a range of producers (e.g. chemolithotroph)
  - MIGS bacteria➞trophic_level
  - MIGS eukaryote➞trophic_level
  - MIMARKS survey➞trophic_level
- virus_enrich_appr - List of approaches used to enrich the sample for viruses, if any
  - MIGS virus➞virus_enrich_appr
  - MIUVIG➞virus_enrich_appr
➞has numeric value
➞has raw value
➞has unit - Example "m"
sequencing field
- adapters - Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters
  - ME➞adapters
  - MIGS bacteria➞adapters
  - MIGS eukaryote➞adapters
  - MIGS org➞adapters
  - MIGS plant➞adapters
  - MIGS virus➞adapters
  - MIMAG➞adapters
  - MIMARKS specimen➞adapters
  - MISAG➞adapters
  - MIUVIG➞adapters
- annot - Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter
  - ME➞annot
  - MIGS bacteria➞annot
  - MIGS eukaryote➞annot
  - MIGS org➞annot
  - MIGS plant➞annot
  - MIGS virus➞annot
  - MIMAG➞annot
  - MISAG➞annot
  - MIUVIG➞annot
- assembly_name - Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community
  - ME➞assembly_name
  - MIGS bacteria➞assembly_name
  - MIGS eukaryote➞assembly_name
  - MIGS org➞assembly_name
  - MIGS plant➞assembly_name
  - MIGS virus➞assembly_name
  - MIMAG➞assembly_name
  - MISAG➞assembly_name
  - MIUVIG➞assembly_name
- assembly_qual - The assembly quality category is based on sets of criteria outlined for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated, contiguous sequence per replicon without gaps or ambiguities with a consensus error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs. Medium Quality Draft:Many fragments with little to no review of assembly other than reporting of standard assembly statistics. Low Quality Draft:Many fragments with little to no review of assembly other than reporting of standard assembly statistics. Assembly statistics include, but are not limited to total assembly size, number of contigs, contig N50/L50, and maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence per replicon without gaps or ambiguities, with extensive manual review and editing to annotate putative gene functions and transcriptional units. High-quality draft genome: One or multiple fragments, totaling ≥ 90% of the expected genome or replicon sequence or predicted complete. Genome fragment(s): One or multiple fragments, totalling < 90% of the expected genome or replicon sequence, or for which no genome size could be estimated
  - ME➞assembly_qual
  - MIGS bacteria➞assembly_qual
  - MIGS eukaryote➞assembly_qual
  - MIGS org➞assembly_qual
  - MIGS plant➞assembly_qual
  - MIGS virus➞assembly_qual
  - MIMAG➞assembly_qual
  - MISAG➞assembly_qual
  - MIUVIG➞assembly_qual
- assembly_software - Tool(s) used for assembly, including version number and parameters
  - ME➞assembly_software
  - MIGS bacteria➞assembly_software
  - MIGS eukaryote➞assembly_software
  - MIGS org➞assembly_software
  - MIGS plant➞assembly_software
  - MIGS virus➞assembly_software
  - MIMAG➞assembly_software
  - MIMARKS specimen➞assembly_software
  - MISAG➞assembly_software
  - MIUVIG➞assembly_software
- associated resource - A related resource that is referenced, cited, or otherwise associated to the sequence.
  - ME➞associated resource
  - MIGS bacteria➞associated resource
  - MIGS eukaryote➞associated resource
  - MIGS org➞associated resource
  - MIGS plant➞associated resource
  - MIGS virus➞associated resource
  - MIMAG➞associated resource
  - MIMARKS specimen➞associated resource
  - MIMARKS survey➞associated resource
  - MISAG➞associated resource
  - MIUVIG➞associated resource
- bin_param - The parameters that have been applied during the extraction of genomes from metagenomic datasets
  - MIMAG➞bin_param
  - MIUVIG➞bin_param
- bin_software - Tool(s) used for the extraction of genomes from metagenomic datasets, where possible include a product ID (PID) of the tool(s) used.
  - MIMAG➞bin_software
  - MIUVIG➞bin_software
- chimera_check - Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences.
  - MIMARKS specimen➞chimera_check
  - MIMARKS survey➞chimera_check
- compl_appr - The approach used to determine the completeness of a given genomic assembly, which would typically make use of a set of conserved marker genes or a closely related reference genome. For UViG completeness, include reference genome or group used, and contig feature suggesting a complete genome
  - MIMAG➞compl_appr
  - MISAG➞compl_appr
  - MIUVIG➞compl_appr
- compl_score - Completeness score is typically based on either the fraction of markers found as compared to a database or the percent of a genome found as compared to a closely related reference genome. High Quality Draft: >90%, Medium Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated completeness scores
  - MIGS bacteria➞compl_score
  - MIGS eukaryote➞compl_score
  - MIGS org➞compl_score
  - MIGS plant➞compl_score
  - MIGS virus➞compl_score
  - MIMAG➞compl_score
  - MISAG➞compl_score
  - MIUVIG➞compl_score
- compl_software - Tools used for completion estimate, i.e. checkm, anvi'o, busco
  - MIGS bacteria➞compl_software
  - MIGS eukaryote➞compl_software
  - MIGS org➞compl_software
  - MIGS plant➞compl_software
  - MIGS virus➞compl_software
  - MIMAG➞compl_software
  - MISAG➞compl_software
  - MIUVIG➞compl_software
- contam_score - The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases
  - MIMAG➞contam_score
  - MISAG➞contam_score
- contam_screen_input - The type of sequence data used as input
  - MIMAG➞contam_screen_input
  - MISAG➞contam_screen_input
- contam_screen_param - Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer
  - MIMAG➞contam_screen_param
  - MISAG➞contam_screen_param
- decontam_software - Tool(s) used in contamination screening
  - MIMAG➞decontam_software
  - MISAG➞decontam_software
- detec_type - Type of UViG detection
  - MIUVIG➞detec_type
- feat_pred - Method used to predict UViGs features such as ORFs, integration site, etc.
  - ME➞feat_pred
  - MIGS bacteria➞feat_pred
  - MIGS eukaryote➞feat_pred
  - MIGS org➞feat_pred
  - MIGS plant➞feat_pred
  - MIGS virus➞feat_pred
  - MIMAG➞feat_pred
  - MISAG➞feat_pred
  - MIUVIG➞feat_pred
- host_pred_appr - Tool or approach used for host prediction
  - MIUVIG➞host_pred_appr
- host_pred_est_acc - For each tool or approach used for host prediction, estimated false discovery rates should be included, either computed de novo or from the literature
  - MIUVIG➞host_pred_est_acc
- lib_layout - Specify whether to expect single, paired, or other configuration of reads
  - ME➞lib_layout
  - MIGS bacteria➞lib_layout
  - MIGS eukaryote➞lib_layout
  - MIGS org➞lib_layout
  - MIGS plant➞lib_layout
  - MIGS virus➞lib_layout
  - MIMAG➞lib_layout
  - MIMARKS specimen➞lib_layout
  - MISAG➞lib_layout
  - MIUVIG➞lib_layout
- lib_reads_seqd - Total number of clones sequenced from the library
  - ME➞lib_reads_seqd
  - MIGS bacteria➞lib_reads_seqd
  - MIGS eukaryote➞lib_reads_seqd
  - MIGS org➞lib_reads_seqd
  - MIGS plant➞lib_reads_seqd
  - MIGS virus➞lib_reads_seqd
  - MIMAG➞lib_reads_seqd
  - MIMARKS specimen➞lib_reads_seqd
  - MISAG➞lib_reads_seqd
  - MIUVIG➞lib_reads_seqd
- lib_screen - Specific enrichment or screening methods applied before and/or after creating libraries
  - ME➞lib_screen
  - MIGS bacteria➞lib_screen
  - MIGS eukaryote➞lib_screen
  - MIGS org➞lib_screen
  - MIGS plant➞lib_screen
  - MIGS virus➞lib_screen
  - MIMAG➞lib_screen
  - MIMARKS specimen➞lib_screen
  - MISAG➞lib_screen
  - MIUVIG➞lib_screen
- lib_size - Total number of clones in the library prepared for the project
  - ME➞lib_size
  - MIGS bacteria➞lib_size
  - MIGS eukaryote➞lib_size
  - MIGS org➞lib_size
  - MIGS plant➞lib_size
  - MIGS virus➞lib_size
  - MIMAG➞lib_size
  - MIMARKS specimen➞lib_size
  - MISAG➞lib_size
  - MIUVIG➞lib_size
- lib_vector - Cloning vector type(s) used in construction of libraries
  - ME➞lib_vector
  - MIGS bacteria➞lib_vector
  - MIGS eukaryote➞lib_vector
  - MIGS org➞lib_vector
  - MIGS plant➞lib_vector
  - MIGS virus➞lib_vector
  - MIMAG➞lib_vector
  - MIMARKS specimen➞lib_vector
  - MISAG➞lib_vector
  - MIUVIG➞lib_vector
- mag_cov_software - Tool(s) used to determine the genome coverage if coverage is used as a binning parameter in the extraction of genomes from metagenomic datasets
  - MIMAG➞mag_cov_software
  - MIUVIG➞mag_cov_software
- mid - Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters
  - ME➞mid
  - MIMAG➞mid
  - MIMARKS specimen➞mid
  - MISAG➞mid
  - MIUVIG➞mid
- nucl_acid_amp - A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids
  - ME➞nucl_acid_amp
  - MIGS bacteria➞nucl_acid_amp
  - MIGS eukaryote➞nucl_acid_amp
  - MIGS org➞nucl_acid_amp
  - MIGS plant➞nucl_acid_amp
  - MIGS virus➞nucl_acid_amp
  - MIMAG➞nucl_acid_amp
  - MIMARKS specimen➞nucl_acid_amp
  - MIMARKS survey➞nucl_acid_amp
  - MISAG➞nucl_acid_amp
  - MIUVIG➞nucl_acid_amp
- nucl_acid_ext - A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample
  - ME➞nucl_acid_ext
  - MIGS bacteria➞nucl_acid_ext
  - MIGS eukaryote➞nucl_acid_ext
  - MIGS org➞nucl_acid_ext
  - MIGS plant➞nucl_acid_ext
  - MIGS virus➞nucl_acid_ext
  - MIMAG➞nucl_acid_ext
  - MIMARKS specimen➞nucl_acid_ext
  - MIMARKS survey➞nucl_acid_ext
  - MISAG➞nucl_acid_ext
  - MIUVIG➞nucl_acid_ext
- number_contig - Total number of contigs in the cleaned/submitted assembly that makes up a given genome, SAG, MAG, or UViG
  - ME➞number_contig
  - MIGS bacteria➞number_contig
  - MIGS eukaryote➞number_contig
  - MIGS org➞number_contig
  - MIGS plant➞number_contig
  - MIGS virus➞number_contig
  - MIMAG➞number_contig
  - MISAG➞number_contig
  - MIUVIG➞number_contig
- otu_class_appr - Cutoffs and approach used when clustering “species-level” OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUS defined from another set of thresholds, even if the latter are the ones primarily used during the analysis
  - MIUVIG➞otu_class_appr
- otu_db - Reference database (i.e. sequences not generated as part of the current study) used to cluster new genomes in "species-level" OTUs, if any
  - MIUVIG➞otu_db
- otu_seq_comp_appr - Tool and thresholds used to compare sequences when computing "species-level" OTUs
  - MIUVIG➞otu_seq_comp_appr
- pcr_cond - Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'
  - MIMARKS specimen➞pcr_cond
  - MIMARKS survey➞pcr_cond
- pcr_primers - PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
  - MIMARKS specimen➞pcr_primers
  - MIMARKS survey➞pcr_primers
- pred_genome_struc - Expected structure of the viral genome
  - MIUVIG➞pred_genome_struc
- pred_genome_type - Type of genome predicted for the UViG
  - MIUVIG➞pred_genome_type
- reassembly_bin - Has an assembly been performed on a genome bin extracted from a metagenomic assembly?
  - MIMAG➞reassembly_bin
  - MIUVIG➞reassembly_bin
- ref_db - List of database(s) used for ORF annotation, along with version number and reference to website or publication
  - ME➞ref_db
  - MIGS bacteria➞ref_db
  - MIGS eukaryote➞ref_db
  - MIGS org➞ref_db
  - MIGS plant➞ref_db
  - MIGS virus➞ref_db
  - MIMAG➞ref_db
  - MISAG➞ref_db
  - MIUVIG➞ref_db
- seq_meth - Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103).
  - ME➞seq_meth
  - MIGS bacteria➞seq_meth
  - MIGS eukaryote➞seq_meth
  - MIGS org➞seq_meth
  - MIGS plant➞seq_meth
  - MIGS virus➞seq_meth
  - MIMAG➞seq_meth
  - MIMARKS specimen➞seq_meth
  - MIMARKS survey➞seq_meth
  - MISAG➞seq_meth
  - MIUVIG➞seq_meth
- seq_quality_check - Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA
  - MIMARKS specimen➞seq_quality_check
  - MIMARKS survey➞seq_quality_check
- sim_search_meth - Tool used to compare ORFs with database, along with version and cutoffs used
  - ME➞sim_search_meth
  - MIGS bacteria➞sim_search_meth
  - MIGS eukaryote➞sim_search_meth
  - MIGS org➞sim_search_meth
  - MIGS plant➞sim_search_meth
  - MIGS virus➞sim_search_meth
  - MIMAG➞sim_search_meth
  - MISAG➞sim_search_meth
  - MIUVIG➞sim_search_meth
- single_cell_lysis_appr - Method used to free DNA from interior of the cell(s) or particle(s)
  - MISAG➞single_cell_lysis_appr
  - MIUVIG➞single_cell_lysis_appr
- single_cell_lysis_prot - Name of the kit or standard protocol used for cell(s) or particle(s) lysis
  - MISAG➞single_cell_lysis_prot
  - MIUVIG➞single_cell_lysis_prot
- sop - Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences
  - ME➞sop
  - MIGS bacteria➞sop
  - MIGS eukaryote➞sop
  - MIGS org➞sop
  - MIGS plant➞sop
  - MIGS virus➞sop
  - MIMAG➞sop
  - MIMARKS specimen➞sop
  - MIMARKS survey➞sop
  - MISAG➞sop
  - MIUVIG➞sop
- sort_tech - Method used to sort/isolate cells or particles of interest
  - MISAG➞sort_tech
  - MIUVIG➞sort_tech
- target_gene - Targeted gene or locus name for marker gene studies
  - MIMARKS specimen➞target_gene
  - MIMARKS survey➞target_gene
- target_subfragment - Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA
  - MIMARKS specimen➞target_subfragment
  - MIMARKS survey➞target_subfragment
- tax_class - Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes
  - ME➞tax_class
  - MIGS bacteria➞tax_class
  - MIGS eukaryote➞tax_class
  - MIGS org➞tax_class
  - MIGS plant➞tax_class
  - MIGS virus➞tax_class
  - MIMAG➞tax_class
  - MISAG➞tax_class
  - MIUVIG➞tax_class
- tax_ident - The phylogenetic marker(s) used to assign an organism name to the SAG or MAG
  - MIGS bacteria➞tax_ident
  - MIGS eukaryote➞tax_ident
  - MIGS org➞tax_ident
  - MIGS plant➞tax_ident
  - MIGS virus➞tax_ident
  - MIMAG➞tax_ident
  - MISAG➞tax_ident
  - MIUVIG➞tax_ident
- trna_ext_software - Tools used for tRNA identification
  - MIMAG➞trna_ext_software
  - MISAG➞trna_ext_software
  - MIUVIG➞trna_ext_software
- trnas - The total number of tRNAs identified from the SAG or MAG
  - MIMAG➞trnas
  - MISAG➞trnas
  - MIUVIG➞trnas
- vir_ident_software - Tool(s) used for the identification of UViG as a viral genome, software or protocol name including version number, parameters, and cutoffs used
  - MIUVIG➞vir_ident_software
- wga_amp_appr - Method used to amplify genomic DNA in preparation for sequencing
  - MISAG➞wga_amp_appr
  - MIUVIG➞wga_amp_appr
- wga_amp_kit - Kit used to amplify genomic DNA in preparation for sequencing
  - MISAG➞wga_amp_kit
  - MIUVIG➞wga_amp_kit
- x_16s_recover - Can a 16S gene be recovered from the submitted SAG or MAG?
  - MIMAG➞x_16s_recover
  - MISAG➞x_16s_recover

Dropdowns

Subsets

Checklist - A MIxS checklist. These can be combined with packages
ChecklistPackageCombination - A combination of a checklist and a package
Package - A MIxS package. These can be combined with checklists

Types

Built in

Bool
Decimal
ElementIdentifier
NCName
NodeIdentifier
URI
URIorCURIE
XSDDate
XSDDateTime
XSDTime
float
int
str

Defined

Boolean (Bool) - A binary (true or false) value
Date (XSDDate) - a date (year, month and day) in an idealized calendar
Datetime (XSDDateTime) - The combination of a date and time
Decimal (Decimal) - A real number with arbitrary precision that conforms to the xsd:decimal specification
Double (float) - A real number that conforms to the xsd:double specification
Float (float) - A real number that conforms to the xsd:float specification
Integer (int) - An integer
Ncname (NCName) - Prefix part of CURIE
Nodeidentifier (NodeIdentifier) - A URI, CURIE or BNODE that represents a node in a model.
Objectidentifier (ElementIdentifier) - A URI or CURIE that represents an object in the model.
String (str) - A character string
Time (XSDTime) - A time object represents a (local) time of day, independent of any particular day
Uri (URI) - a complete URI
Uriorcurie (URIorCURIE) - a URI or a CURIE