Slot: contam_score

The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases

URI: mixs.vocab:contam_score

Domain and Range

None → _0..1 String

Parents

• is_a: sequencing field

Children

• MIMAG➞contam_score
• MISAG➞contam_score

Used by

• Core

Other properties

Aliases:		contamination score
Mappings:		MIXS:0000072
Comments:		Expected value: value
		Position: 70.0
Examples:		Example(value='1%', description=None)
Exact Mappings:		MIGS: